JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM109_chr11_60909158_60928443	0/0	c0009	732	1	1	0	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	c0010	732	1	0	0	1	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	c0011	732	1	0	0	1	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM114_chr16_8564500_8595511	1/1	c0001	672	403	90	70	179	16	46	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	c0002	672	6	0	2	4	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	c0003	672	2	0	0	2	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	c0004	672	2	0	2	0	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	c0005	672	1	0	0	1	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	c0006	672	1	1	0	0	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	c0007	672	1	1	0	0	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM115_chr3_50349750_50364521	1/1	c0001	1056	353	90	61	156	14	30	copy fasta	TMEM115	chr3	50349750	50364521
TMEM115_chr3_50349750_50364521	0/0	c0002	1056	1	0	1	0	0	0	copy fasta	TMEM115	chr3	50349750	50364521
TMEM116_chr12_111926298_112018165	1/1	c0001	1014	231	51	43	105	4	26	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0002	1014	99	39	8	44	2	6	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0003	1014	4	0	0	4	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0004	1014	1	1	0	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0005	1014	1	0	0	1	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0006	1014	1	1	0	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0007	1014	1	0	0	0	0	1	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0008	1014	1	1	0	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0009	1014	1	0	1	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0010	1014	1	1	0	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	c0011	1014	1	0	0	0	0	1	copy fasta	TMEM116	chr12	111926298	112018165
TMEM117_chr12_43831081_44394758	1/1	c0001	1545	109	80	23	0	0	4	copy fasta	TMEM117	chr12	43831081	44394758
TMEM117_chr12_43831081_44394758	0/0	c0002	1545	1	0	1	0	0	0	copy fasta	TMEM117	chr12	43831081	44394758
TMEM119_chr12_108584851_108603084	1/0	c0001	852	119	25	31	38	12	12	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0002	852	82	13	9	43	1	16	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0003	852	79	1	11	59	1	7	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0004	852	45	4	11	28	0	2	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/1	c0005	852	34	0	5	25	1	2	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0006	852	33	22	3	2	0	6	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0007	852	17	16	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0008	852	10	7	3	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0009	852	10	8	0	2	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0010	852	5	0	1	0	1	3	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0011	852	3	0	0	3	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0012	852	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0013	852	1	1	0	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0014	852	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0015	852	1	1	0	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0016	852	1	0	0	1	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0017	852	1	0	0	1	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	c0018	852	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM11_chr17_21192954_21219161	1/1	c0001	579	418	87	78	191	14	46	copy fasta	TMEM11	chr17	21192954	21219161
TMEM11_chr17_21192954_21219161	0/0	c0002	579	3	3	0	0	0	0	copy fasta	TMEM11	chr17	21192954	21219161
TMEM11_chr17_21192954_21219161	0/0	c0003	579	1	0	0	1	0	0	copy fasta	TMEM11	chr17	21192954	21219161
TMEM120A_chr7_75981831_75999595	1/1	c0001	1032	309	76	69	113	14	35	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0002	1032	43	12	4	15	2	10	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0003	1032	5	0	0	3	0	2	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0004	1032	2	1	0	0	0	1	copy fasta	TMEM120A	chr7	75981831	75999595