JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM120A_chr7_75981831_75999595	0/0	c0005	1032	1	0	0	1	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0006	1032	1	0	0	1	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0007	1032	1	0	0	1	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0008	1032	1	0	0	1	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0009	1032	1	0	1	0	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0010	1032	1	0	0	1	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0011	1032	1	0	0	1	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0012	1032	1	0	0	1	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	c0013	1032	1	1	0	0	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120B_chr12_121707752_121787068	1/1	c0001	1020	186	62	29	64	10	19	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	c0002	1020	110	18	28	45	4	15	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	c0003	1020	8	7	1	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	c0004	1020	3	3	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	c0005	1020	3	0	0	3	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	c0006	1020	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	c0007	1020	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	c0008	1020	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	c0009	1020	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM121B_chr22_17111297_17126360	0/0	c0001	1737	110	48	20	32	4	6	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	1/0	c0002	1737	104	26	18	40	5	14	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0003	1737	94	1	18	68	0	7	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/1	c0004	1737	83	2	19	45	4	12	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0005	1737	25	5	0	17	0	3	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0006	1737	6	6	0	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0007	1737	6	0	0	4	2	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0008	1737	5	0	0	5	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0009	1737	5	0	0	4	0	1	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0010	1737	4	1	1	0	1	1	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0011	1737	3	2	1	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0012	1737	2	1	1	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0013	1737	2	2	0	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0014	1737	2	2	0	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0015	1737	2	0	0	2	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0016	1737	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0017	1737	1	1	0	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0018	1737	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0019	1737	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0020	1737	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0021	1737	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0022	1737	1	0	0	0	0	1	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0023	1737	1	0	1	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0024	1737	1	0	0	0	0	1	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0025	1737	1	1	0	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0026	1737	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0027	1737	1	0	1	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0028	1737	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0029	1737	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	c0030	1737	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121_chr14_105521583_105535198	1/0	c0001	960	192	25	42	77	12	35	copy fasta	TMEM121	chr14	105521583	105535198
TMEM121_chr14_105521583_105535198	0/1	c0002	957	119	68	15	25	4	6	copy fasta	TMEM121	chr14	105521583	105535198