JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM121_chr14_105521583_105535198	0/0	c0003	957	36	0	0	34	0	2	copy fasta	TMEM121	chr14	105521583	105535198
TMEM121_chr14_105521583_105535198	0/0	c0004	960	2	0	0	0	0	2	copy fasta	TMEM121	chr14	105521583	105535198
TMEM121_chr14_105521583_105535198	0/0	c0005	960	1	0	0	0	0	1	copy fasta	TMEM121	chr14	105521583	105535198
TMEM121_chr14_105521583_105535198	0/0	c0006	960	1	0	1	0	0	0	copy fasta	TMEM121	chr14	105521583	105535198
TMEM121_chr14_105521583_105535198	0/0	c0007	960	1	1	0	0	0	0	copy fasta	TMEM121	chr14	105521583	105535198
TMEM123_chr11_102391332_102457765	1/1	c0001	627	177	73	38	31	9	24	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	c0002	627	9	1	5	0	1	2	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	c0003	627	5	4	1	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	c0004	627	5	5	0	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	c0005	627	4	1	1	0	0	2	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	c0006	627	2	2	0	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	c0007	627	1	0	0	1	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	c0008	627	1	0	1	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM125_chr1_43264983_43279002	1/1	c0001	660	425	89	81	193	16	44	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	c0002	660	3	0	0	1	0	2	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	c0003	660	2	2	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	c0004	660	2	2	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	c0005	660	2	2	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	c0006	660	1	1	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	c0007	660	1	0	1	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	c0008	660	1	1	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	c0009	660	1	1	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM126A_chr11_85642967_85661542	1/1	c0001	588	390	84	69	188	12	35	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	c0002	588	3	3	0	0	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	c0003	588	2	0	1	1	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	c0004	575	1	1	0	0	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	c0005	588	1	0	0	0	0	1	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	c0006	588	1	0	0	1	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126B_chr11_85623593_85641536	1/1	c0001	693	407	91	67	188	17	42	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	c0002	693	3	0	1	0	0	2	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	c0003	693	1	0	0	0	1	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	c0004	693	1	0	1	0	0	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	c0005	693	1	0	1	0	0	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	c0006	693	1	1	0	0	0	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM127_chr2_96243514_96270997	1/1	c0001	717	367	88	60	180	10	27	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	c0002	717	45	4	9	19	0	13	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	c0003	717	1	0	1	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	c0004	717	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM128_chr4_4230542_4253223	1/1	c0001	498	227	54	51	94	6	20	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	c0002	498	94	19	22	42	4	7	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	c0003	498	67	0	5	46	1	15	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	c0004	498	63	18	6	30	3	6	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	c0005	498	3	0	1	0	2	0	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	c0006	498	3	3	0	0	0	0	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	c0007	498	1	0	1	0	0	0	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	c0008	498	1	0	0	1	0	0	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	c0009	498	1	0	0	1	0	0	copy fasta	TMEM128	chr4	4230542	4253223
TMEM129_chr4_1710952_1726323	1/1	c0001	1089	222	72	34	81	8	25	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0002	1089	62	1	19	35	2	5	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0003	1089	56	3	13	28	3	9	copy fasta	TMEM129	chr4	1710952	1726323