JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM129_chr4_1710952_1726323	0/0	c0004	1089	16	0	9	7	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0005	1089	9	8	1	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0006	1089	8	0	1	4	0	3	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0007	1089	4	0	0	0	0	4	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0008	1089	2	0	0	2	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0009	1089	2	2	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0010	1089	1	0	0	0	1	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0011	1089	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0012	1089	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0013	1089	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0014	1089	1	0	0	1	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0015	1089	1	0	1	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	c0016	1089	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM130_chr7_98841490_98875014	0/1	c0001	1272	249	19	55	123	10	41	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	1/0	c0002	1272	115	75	16	17	4	2	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	c0003	1272	6	0	0	6	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	c0004	1272	4	0	2	0	2	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	c0005	1272	3	0	2	0	0	1	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	c0006	1272	1	0	0	0	0	1	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	c0007	1272	1	0	0	0	0	1	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	c0008	1272	1	0	1	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM131L_chr4_153461360_153641711	0/0	c0001	4833	32	26	1	3	0	2	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0002	4833	27	13	0	8	1	5	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	1/0	c0003	4833	21	2	5	7	1	5	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0004	4833	20	0	7	12	1	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0005	4833	14	11	2	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0006	4833	12	2	0	8	1	1	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0007	4833	9	6	2	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0008	4833	9	4	2	2	0	1	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0009	4833	8	0	1	7	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0010	4833	7	2	3	2	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0011	4833	7	0	2	1	0	4	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0012	4833	7	0	2	5	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0013	4833	6	0	0	5	0	1	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0014	4833	6	0	3	3	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0015	4833	4	0	0	3	0	1	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0016	4833	4	0	2	1	0	1	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0017	4833	3	3	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0018	4833	3	2	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0019	4833	3	0	3	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0020	4833	2	0	0	1	0	1	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0021	4833	2	2	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0022	4833	2	0	1	0	1	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0023	4833	2	0	2	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0024	4833	2	2	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0025	4833	2	0	0	2	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0026	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0027	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0028	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0029	4833	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711