JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM131L_chr4_153461360_153641711	0/0	c0030	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0031	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0032	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0033	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0034	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0035	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0036	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0037	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0038	4833	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0039	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0040	4833	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0041	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0042	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0043	4833	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/1	c0044	4833	1	0	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0045	4833	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0046	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0047	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0048	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0049	4833	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0050	4833	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0051	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0052	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0053	4833	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0054	4833	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0055	4833	1	0	0	0	1	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0056	4833	1	0	0	1	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0057	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0058	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	c0059	4833	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131_chr2_97751336_98000948	0/0	c0001	5652	108	55	17	26	8	2	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	1/1	c0002	5652	71	5	14	43	0	7	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0003	5652	27	1	12	1	5	8	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0004	5652	26	0	0	25	0	1	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0005	5652	10	8	2	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0006	5652	6	1	4	0	1	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0007	5652	6	5	1	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0008	5652	5	5	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0009	5652	3	0	3	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0010	5652	2	2	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0011	5652	2	0	2	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0012	5652	2	0	0	0	0	2	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0013	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0014	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0015	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0016	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0017	5652	1	0	0	1	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0018	5652	1	0	0	1	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0019	5652	1	0	0	0	0	1	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0020	5652	1	0	1	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948