JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCAR3_chr1_93556741_93686837	0/0	c0012	2478	1	0	0	1	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0013	2478	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0014	2478	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0015	2478	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0016	2478	1	0	0	0	1	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0017	2478	1	0	0	0	0	1	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0018	2478	1	0	0	0	0	1	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0019	2478	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0020	2478	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0021	2478	1	0	1	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0022	2478	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAS1_chr20_53938541_54075594	0/0	c0001	1890	82	28	19	24	3	8	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	1/0	c0002	1890	67	8	17	28	4	9	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0003	1890	39	3	4	26	1	5	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0004	1890	28	2	2	20	1	3	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0005	1890	22	0	1	21	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0006	1890	20	4	1	9	2	4	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0007	1890	14	0	0	14	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0008	1890	13	13	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0009	1890	6	0	0	6	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0010	1890	6	5	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0011	1890	5	4	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0012	1890	5	4	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0013	1890	4	1	2	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0014	1890	4	0	1	0	0	3	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0015	1890	3	0	0	2	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0016	1890	3	1	2	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0017	1890	3	3	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0018	1890	3	0	0	3	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/1	c0019	1890	3	1	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0020	1890	2	0	0	2	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0021	1890	2	1	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0022	1890	2	2	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0023	1890	2	0	0	2	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0024	1890	2	1	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0025	1890	2	0	2	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0026	1890	1	0	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0027	1890	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0028	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0029	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0030	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0031	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0032	1890	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0033	1890	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0034	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0035	1890	1	0	0	0	1	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0036	1890	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0037	1890	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0038	1890	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0039	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594