JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM131_chr2_97751336_98000948	0/0	c0021	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0022	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0023	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0024	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0025	5652	1	0	0	0	0	1	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0026	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0027	5652	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	c0028	5652	1	0	0	1	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM132A_chr11_60919460_60942159	0/0	c0001	3072	106	4	13	72	3	14	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	1/0	c0002	3072	67	30	22	5	4	5	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/1	c0003	3072	62	9	12	28	4	8	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0004	3072	44	0	4	36	0	4	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0005	3072	19	16	1	0	0	2	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0006	3072	18	11	6	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0007	3072	12	12	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0008	3072	5	0	3	0	1	1	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0009	3072	4	0	0	4	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0010	3072	3	0	0	0	3	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0011	3072	3	3	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0012	3072	2	0	2	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0013	3072	2	0	1	0	1	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0014	3072	2	0	0	2	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0015	3072	1	0	0	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0016	3072	1	0	0	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0017	3072	1	0	0	0	0	1	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0018	3072	1	0	0	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0019	3072	1	0	0	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0020	3072	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0021	3072	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0022	3072	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0023	3072	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0024	3072	1	0	0	0	0	1	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0025	3072	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0026	3072	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	c0027	3072	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132B_chr12_125181386_125667369	0/0	c0001	3252	20	10	5	3	0	2	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0002	3252	14	1	5	5	0	3	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0003	3252	14	8	5	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0004	3252	13	1	5	4	0	3	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0005	3252	12	9	1	2	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0006	3252	8	2	3	2	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0007	3252	4	0	0	3	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0008	3252	3	1	1	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0009	3252	3	3	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0010	3252	3	3	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0011	3252	2	0	0	2	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0012	3252	2	2	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0013	3252	2	0	0	1	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0014	3252	2	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0015	3252	1	0	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369