JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM132B_chr12_125181386_125667369	0/0	c0016	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0017	3252	1	0	0	0	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0018	3252	1	0	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0019	3252	1	0	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0020	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0021	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0022	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0023	3252	1	0	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0024	3252	1	0	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0025	3252	1	0	0	0	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0026	3252	1	0	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0027	3252	1	0	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0028	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0029	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0030	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0031	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0032	3252	1	0	0	0	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0033	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0034	3252	1	0	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0035	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0036	3252	1	0	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0037	3252	1	0	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0038	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0039	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	c0040	3252	1	1	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132C_chr12_128262170_128712911	0/0	c0001	3327	18	1	5	6	1	5	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0002	3327	8	0	3	3	0	2	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0003	3327	7	0	1	1	0	5	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0004	3327	5	0	5	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0005	3327	4	2	1	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0006	3327	4	1	2	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0007	3327	4	4	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0008	3327	4	4	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0009	3327	4	1	1	0	0	2	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0010	3327	4	3	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0011	3327	4	0	2	1	1	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0012	3327	3	0	1	2	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0013	3327	3	3	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0014	3327	3	2	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0015	3327	3	1	1	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0016	3327	3	3	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0017	3327	3	3	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0018	3327	2	1	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0019	3327	2	0	0	1	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0020	3327	2	2	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0021	3327	2	2	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0022	3327	2	2	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0023	3327	2	0	1	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0024	3327	2	2	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0025	3327	2	2	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911