JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
TMEM132C_chr12_128262170_128712911	1/0	c0026	3327	2	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0027	3327	2	2	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0028	3327	2	2	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0029	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0030	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0031	3327	1	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0032	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0033	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0034	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0035	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0036	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0037	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0038	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0039	3327	1	0	0	1	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0040	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0041	3327	1	0	0	1	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0042	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0043	3327	1	0	0	1	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0044	3327	1	0	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0045	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0046	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0047	3327	1	0	0	1	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0048	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0049	3327	1	0	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0050	3327	1	0	0	1	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0051	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0052	3327	1	0	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0053	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0054	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0055	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0056	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0057	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0058	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0059	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0060	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0061	3327	1	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0062	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0063	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0064	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0065	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0066	3327	1	0	0	1	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0067	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0068	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0069	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0070	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0071	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0072	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0073	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0074	3327	1	0	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0075	3327	1	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911