JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM132C_chr12_128262170_128712911	0/0	c0076	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0077	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0078	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0079	3327	1	0	0	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0080	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0081	3327	1	0	0	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0082	3327	1	0	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0083	3327	1	0	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0084	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/1	c0085	3327	1	0	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0086	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0087	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0088	3327	1	0	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0089	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0090	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0091	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	c0092	3327	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132D_chr12_129066726_129909025	0/0	c0001	3300	50	26	6	4	4	10	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	1/0	c0002	3300	13	9	1	0	0	2	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0003	3300	8	7	0	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0004	3300	6	2	2	1	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0005	3300	3	0	2	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0006	3300	2	0	2	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0007	3300	2	0	1	1	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0008	3300	1	0	0	1	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0009	3300	1	0	0	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/1	c0010	3300	1	0	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0011	3300	1	0	0	1	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0012	3300	1	0	1	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0013	3300	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0014	3300	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0015	3300	1	0	1	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0016	3300	1	0	0	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	c0017	3300	1	0	0	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132E_chr17_34574582_34644318	1/0	c0001	3225	263	60	58	100	15	29	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/1	c0002	3225	88	6	14	56	2	9	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0003	3225	13	4	0	0	0	9	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0004	3225	11	10	1	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0005	3225	4	4	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0006	3225	4	4	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0007	3225	3	0	0	3	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0008	3225	3	3	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0009	3225	2	0	0	2	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0010	3225	2	2	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0011	3204	1	0	0	1	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0012	3225	1	0	0	1	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0013	3225	1	0	0	0	0	1	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0014	3225	1	0	1	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0015	3225	1	0	0	1	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0016	3225	1	0	0	0	1	0	copy fasta	TMEM132E	chr17	34574582	34644318