JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM132E_chr17_34574582_34644318	0/0	c0017	3225	1	0	0	1	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0018	3225	1	1	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0019	3225	1	0	0	1	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0020	3225	1	1	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	c0021	3225	1	1	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM134_chr11_67456710_67474251	1/1	c0001	588	348	92	66	138	14	36	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	c0002	588	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	c0003	588	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	c0004	588	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	c0005	588	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM135_chr11_87032934_87333824	0/1	c0001	1377	141	49	26	39	5	21	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	1/0	c0002	1377	105	20	21	48	5	10	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	c0003	1377	25	4	0	19	0	2	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	c0004	1377	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	c0005	1377	1	0	0	0	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	c0006	1377	1	0	1	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM138_chr11_61357374_61374509	1/1	c0001	489	238	79	43	72	8	34	copy fasta	TMEM138	chr11	61357374	61374509
TMEM138_chr11_61357374_61374509	0/0	c0002	489	8	6	1	0	0	1	copy fasta	TMEM138	chr11	61357374	61374509
TMEM138_chr11_61357374_61374509	0/0	c0003	489	1	1	0	0	0	0	copy fasta	TMEM138	chr11	61357374	61374509
TMEM138_chr11_61357374_61374509	0/0	c0004	489	1	0	0	0	0	1	copy fasta	TMEM138	chr11	61357374	61374509
TMEM139_chr7_143279958_143293048	1/1	c0001	651	297	86	58	97	16	38	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	c0002	651	2	0	0	0	0	2	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	c0003	651	2	2	0	0	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	c0004	651	1	0	1	0	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	c0005	651	1	0	1	0	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	c0006	651	1	0	0	1	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM140_chr7_135143072_135171215	0/0	c0001	558	169	34	38	60	8	29	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/1	c0002	558	160	27	30	88	3	11	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	1/0	c0003	558	49	33	2	11	0	2	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	c0004	558	6	0	4	0	1	1	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	c0005	558	2	0	0	2	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	c0006	558	1	0	0	0	0	1	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	c0007	558	1	0	0	1	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM141_chr9_136786344_136798317	1/1	c0001	327	386	96	73	162	16	37	copy fasta	TMEM141	chr9	136786344	136798317
TMEM141_chr9_136786344_136798317	0/0	c0002	327	2	0	1	0	0	1	copy fasta	TMEM141	chr9	136786344	136798317
TMEM143_chr19_48327356_48368940	0/0	c0001	1380	119	27	25	53	1	13	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	1/1	c0002	1380	86	39	11	20	2	12	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0003	1380	67	16	15	24	4	8	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0004	1380	56	7	16	27	1	5	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0005	1380	3	0	1	0	2	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0006	1380	3	1	1	0	0	1	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0007	1380	3	0	3	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0008	1380	3	3	0	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0009	1380	1	1	0	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0010	1380	1	0	1	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0011	1380	1	0	1	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0012	1380	1	0	0	1	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0013	1380	1	0	0	1	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0014	1380	1	1	0	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0015	1380	1	1	0	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940