JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM143_chr19_48327356_48368940	0/0	c0016	1380	1	0	0	1	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0017	1380	1	0	0	1	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	c0018	1380	1	0	0	0	0	1	copy fasta	TMEM143	chr19	48327356	48368940
TMEM144_chr4_158205486_158260416	1/1	c0001	1038	229	84	44	65	10	24	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	c0002	1038	38	6	12	10	4	6	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	c0003	1038	2	2	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	c0004	1038	2	2	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	c0005	1038	2	0	2	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	c0006	1038	1	0	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM145_chr19_42308309_42330064	1/1	c0001	1482	219	84	53	40	10	30	copy fasta	TMEM145	chr19	42308309	42330064
TMEM145_chr19_42308309_42330064	0/0	c0002	1482	1	0	1	0	0	0	copy fasta	TMEM145	chr19	42308309	42330064
TMEM147_chr19_35540626_35552526	1/1	c0001	675	416	90	78	184	14	48	copy fasta	TMEM147	chr19	35540626	35552526
TMEM147_chr19_35540626_35552526	0/0	c0002	675	3	0	0	3	0	0	copy fasta	TMEM147	chr19	35540626	35552526
TMEM147_chr19_35540626_35552526	0/0	c0003	675	3	3	0	0	0	0	copy fasta	TMEM147	chr19	35540626	35552526
TMEM147_chr19_35540626_35552526	0/0	c0004	675	1	1	0	0	0	0	copy fasta	TMEM147	chr19	35540626	35552526
TMEM147_chr19_35540626_35552526	0/0	c0005	675	1	0	0	1	0	0	copy fasta	TMEM147	chr19	35540626	35552526
TMEM14A_chr6_52666113_52691588	1/1	c0001	300	425	98	79	192	14	40	copy fasta	TMEM14A	chr6	52666113	52691588
TMEM14A_chr6_52666113_52691588	0/0	c0002	300	1	0	1	0	0	0	copy fasta	TMEM14A	chr6	52666113	52691588
TMEM14B_chr6_10742805_10761981	1/0	c0001	345	431	92	80	198	16	44	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/0	c0002	345	8	8	0	0	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/1	c0003	345	1	0	0	0	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14C_chr6_10718070_10736127	1/1	c0001	339	435	98	82	193	14	46	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	c0002	339	2	2	0	0	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	c0003	339	1	0	0	1	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM150A_chr2_85593547_85607698	1/1	c0001	816	331	84	64	145	9	27	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	0/0	c0002	816	52	10	14	14	1	13	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	0/0	c0003	816	1	1	0	0	0	0	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	0/0	c0004	816	1	0	0	1	0	0	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	0/0	c0005	816	1	1	0	0	0	0	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150B_chr19_55307801_55330341	0/1	c0001	702	202	87	39	47	5	23	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	1/0	c0002	702	145	3	28	91	1	21	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	0/0	c0003	702	2	2	0	0	0	0	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	0/0	c0004	702	1	1	0	0	0	0	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	0/0	c0005	702	1	1	0	0	0	0	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	0/0	c0006	702	1	0	1	0	0	0	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150C_chr4_82478176_82566988	1/1	c0001	750	253	87	43	76	14	31	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	c0002	750	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	c0003	750	1	0	1	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	c0004	750	1	0	0	0	0	1	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM151A_chr11_66286894_66301664	1/1	c0001	1407	441	98	78	208	15	40	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	c0002	1407	6	0	3	0	1	2	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	c0003	1407	1	0	0	0	0	1	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	c0004	1407	1	0	0	0	0	1	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	c0005	1407	1	0	1	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151B_chr6_44265450_44284444	0/1	c0001	1701	201	36	46	75	12	31	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	1/0	c0002	1701	127	45	18	50	1	12	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0003	1701	52	0	3	46	3	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0004	1701	11	0	0	11	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0005	1701	4	0	4	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0006	1701	3	0	0	3	0	0	copy fasta	TMEM151B	chr6	44265450	44284444