JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM151B_chr6_44265450_44284444	0/0	c0007	1701	3	3	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0008	1701	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0009	1701	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0010	1701	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0011	1701	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0012	1701	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0013	1701	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0014	1701	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0015	1701	1	0	0	0	0	1	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	c0016	1701	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM154_chr4_152613628_152684997	1/1	c0001	552	298	94	50	94	16	42	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	c0002	552	1	0	0	1	0	0	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	c0003	552	1	0	0	1	0	0	copy fasta	TMEM154	chr4	152613628	152684997
TMEM156_chr4_38961744_39037409	0/1	c0001	891	231	67	44	90	4	25	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	c0002	891	109	13	15	62	2	17	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	1/0	c0003	891	18	0	10	6	1	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	c0004	891	8	0	0	8	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	c0005	891	6	6	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	c0006	891	4	0	2	0	1	1	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	c0007	891	3	0	0	2	0	1	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	c0008	891	3	3	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	c0009	891	2	0	0	2	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	c0010	891	1	0	1	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	c0011	891	1	1	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM158_chr3_45219466_45231287	0/1	c0001	903	141	11	37	69	8	15	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	1/0	c0002	903	139	60	23	41	1	13	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	c0003	903	120	17	20	60	7	16	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	c0004	903	4	4	0	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	c0005	876	1	1	0	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	c0006	903	1	1	0	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	c0007	903	1	0	0	1	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	c0008	903	1	0	0	1	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	c0009	903	1	1	0	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	c0010	903	1	1	0	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM160_chr19_47040909_47053624	1/1	c0001	567	426	97	71	195	13	48	copy fasta	TMEM160	chr19	47040909	47053624
TMEM160_chr19_47040909_47053624	0/0	c0002	567	13	1	5	0	5	2	copy fasta	TMEM160	chr19	47040909	47053624
TMEM160_chr19_47040909_47053624	0/0	c0003	567	2	2	0	0	0	0	copy fasta	TMEM160	chr19	47040909	47053624
TMEM160_chr19_47040909_47053624	0/0	c0004	567	1	0	0	1	0	0	copy fasta	TMEM160	chr19	47040909	47053624
TMEM160_chr19_47040909_47053624	0/0	c0005	567	1	0	0	1	0	0	copy fasta	TMEM160	chr19	47040909	47053624
TMEM160_chr19_47040909_47053624	0/0	c0006	567	1	0	0	1	0	0	copy fasta	TMEM160	chr19	47040909	47053624
TMEM161A_chr19_19114169_19143478	0/1	c0001	1440	226	55	50	85	10	25	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0002	1440	50	1	4	35	3	7	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0003	1440	24	4	2	10	1	7	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	1/0	c0004	1440	21	8	9	2	0	1	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0005	1440	7	7	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0006	1440	3	3	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0007	1440	3	3	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0008	1440	2	0	0	2	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0009	1440	2	2	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0010	1440	2	0	2	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478