JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM161A_chr19_19114169_19143478	0/0	c0011	1440	2	2	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0012	1440	2	0	2	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0013	1440	1	1	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0014	1440	1	0	0	1	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0015	1440	1	1	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0016	1440	1	1	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0017	1440	1	0	1	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0018	1440	1	0	0	1	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0019	1440	1	1	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	c0020	1440	1	1	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161B_chr5_88190047_88273845	1/1	c0001	1464	128	68	25	12	3	18	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	c0002	1464	111	9	28	56	9	9	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	c0003	1464	41	0	1	38	0	2	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	c0004	1464	1	0	0	0	0	1	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	c0005	1464	1	1	0	0	0	0	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM163_chr2_134450759_134724000	1/1	c0001	870	214	73	46	64	6	23	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	c0002	870	4	2	0	0	0	2	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	c0003	870	3	0	0	2	0	1	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	c0004	870	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM164_chrX_109998114_110182788	1/1	c0001	894	196	58	39	73	5	19	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	c0002	894	1	0	0	0	0	1	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	c0003	893	1	0	0	1	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM165_chr4_55390957_55431175	0/0	c0001	975	275	83	50	105	8	29	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	1/1	c0002	975	103	10	20	53	7	11	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	c0003	975	1	0	1	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	c0004	975	1	0	0	0	1	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	c0005	975	1	0	1	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	c0006	975	1	1	0	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM167A_chr5_83047846_83082394	1/1	c0001	219	363	92	62	154	16	37	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	c0002	219	1	0	0	0	0	1	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167B_chr1_109085764_109101934	1/1	c0001	225	395	96	74	168	18	37	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	c0002	225	1	0	0	0	0	1	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM168_chr7_112757377_112795393	1/1	c0001	2094	245	81	51	66	10	35	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0002	2094	10	0	0	10	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0003	2094	6	2	3	0	0	1	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0004	2094	4	0	0	4	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0005	2094	2	0	1	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0006	2094	2	0	0	2	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0007	2094	1	0	0	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0008	2094	1	0	0	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0009	2094	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0010	2094	1	0	0	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	c0011	2059	1	0	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM169_chr2_216076919_216107783	1/1	c0001	894	354	64	72	163	13	40	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0002	894	30	29	1	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0003	894	7	1	3	0	2	1	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0004	894	5	5	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0005	894	5	0	1	0	0	4	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0006	894	1	0	0	0	0	1	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0007	894	1	0	0	1	0	0	copy fasta	TMEM169	chr2	216076919	216107783