JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM169_chr2_216076919_216107783	0/0	c0008	894	1	0	0	1	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0009	894	1	0	0	1	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0010	894	1	0	0	0	1	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0011	894	1	0	1	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	c0012	894	1	1	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM170A_chr16_75438054_75469689	1/0	c0001	435	358	89	64	150	18	36	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	c0002	435	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	c0003	435	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	c0004	435	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170B_chr6_11532749_11588524	1/1	c0001	399	254	78	37	109	7	21	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	c0002	399	94	8	10	56	7	13	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	c0003	399	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	c0004	399	1	1	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	c0005	399	1	1	0	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	c0006	399	1	0	1	0	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM171_chr5_73115575_73136809	0/1	c0001	975	208	40	27	119	2	19	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	1/0	c0002	975	157	37	29	66	4	20	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0003	975	56	7	19	20	5	5	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0004	975	4	3	1	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0005	975	3	1	1	0	0	1	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0006	975	2	0	0	0	2	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0007	975	2	0	0	0	1	1	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0008	975	2	2	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0009	975	2	0	1	0	0	1	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0010	975	2	2	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0011	975	1	0	1	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0012	975	1	1	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0013	975	1	1	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0014	975	1	0	0	0	0	1	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0015	975	1	1	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0016	975	1	1	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0017	975	1	1	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0018	975	1	1	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0019	975	1	0	1	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0020	975	1	0	0	1	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0021	975	1	0	0	1	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	c0022	975	1	0	0	1	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM174_chr5_73168193_73180143	1/1	c0001	732	426	87	79	202	14	42	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	c0002	732	3	3	0	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	c0003	732	1	1	0	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	c0004	732	1	0	1	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	c0005	732	1	1	0	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM175_chr4_927460_963656	0/1	c0001	1515	172	42	18	94	5	12	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	1/0	c0002	1515	91	17	33	32	4	4	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0003	1515	30	2	1	11	2	14	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0004	1515	13	0	2	10	0	1	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0005	1515	9	9	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0006	1515	9	0	0	9	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0007	1515	8	8	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0008	1515	6	0	5	0	0	1	copy fasta	TMEM175	chr4	927460	963656