JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM175_chr4_927460_963656	0/0	c0009	1515	6	0	0	1	0	5	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0010	1515	4	0	2	1	0	1	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0011	1515	3	0	0	3	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0012	1515	3	3	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0013	1515	2	1	1	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0014	1515	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0015	1515	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0016	1515	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0017	1515	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0018	1515	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0019	1515	1	0	0	1	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0020	1515	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0021	1515	1	0	0	1	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0022	1515	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0023	1515	1	0	0	1	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0024	1515	1	0	0	1	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0025	1515	1	0	0	1	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0026	1515	1	0	0	0	1	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0027	1515	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0028	1515	1	0	1	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	c0029	1515	1	0	1	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM176A_chr7_150795769_150810118	0/1	c0001	708	190	23	19	125	2	20	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0002	708	73	17	24	25	2	5	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0003	708	51	16	14	5	6	10	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	1/0	c0004	708	39	2	12	17	2	5	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0005	708	39	18	11	4	2	4	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0006	708	20	13	1	6	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0007	708	4	3	1	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0008	708	3	2	1	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0009	708	3	1	2	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0010	708	2	0	0	0	2	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0011	708	1	0	1	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0012	708	1	0	0	1	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0013	708	1	0	0	1	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0014	708	1	0	0	0	0	1	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0015	708	1	0	0	0	0	1	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0016	708	1	0	0	1	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0017	708	1	1	0	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	c0018	708	1	0	0	1	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176B_chr7_150786301_150805364	0/1	c0001	813	198	23	23	123	8	20	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	1/0	c0002	813	183	39	44	77	6	16	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0003	813	51	13	7	24	1	6	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0004	813	13	10	2	0	0	1	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0005	813	6	0	6	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0006	813	5	1	0	4	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0007	813	4	0	3	0	0	1	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0008	813	3	3	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0009	813	2	2	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0010	813	2	2	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0011	813	1	1	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364