JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCAS1_chr20_53938541_54075594	0/0	c0040	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0041	1890	1	0	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0042	1890	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0043	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0044	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0045	1890	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0046	1890	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	c0047	1890	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS2_chr1_114562557_114586615	1/1	c0001	678	409	92	78	175	16	46	copy fasta	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	c0002	678	2	2	0	0	0	0	copy fasta	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	c0003	678	1	0	0	1	0	0	copy fasta	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	c0004	678	1	0	0	1	0	0	copy fasta	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	c0005	678	1	0	0	1	0	0	copy fasta	BCAS2	chr1	114562557	114586615
BCAS3_chr17_60672851_61397831	0/0	c0001	2742	19	11	5	3	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	c0002	2742	18	16	2	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	c0003	2742	13	12	0	1	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	c0004	2742	11	11	0	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	c0005	2742	7	7	0	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	c0006	2742	2	1	1	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	c0007	2742	1	1	0	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	c0008	2742	1	1	0	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	c0009	2742	1	1	0	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	c0010	2742	1	1	0	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS4_chr20_50790061_50882177	1/1	c0001	522	190	54	51	61	5	17	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	c0002	522	51	8	8	21	1	13	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	c0003	522	11	9	2	0	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	c0004	522	9	8	0	1	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	c0005	522	5	4	1	0	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	c0006	522	1	0	0	1	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	c0007	522	1	0	0	1	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	c0008	522	1	1	0	0	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	c0009	522	1	0	0	1	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAT1_chr12_24805024_24954101	1/1	c0001	1161	308	85	64	117	11	29	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	c0002	1161	5	0	1	0	0	4	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	c0003	1161	3	1	1	0	1	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	c0004	1161	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	c0005	1161	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	c0006	1161	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	c0007	1161	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	c0008	4560	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT2_chr19_48790064_48816029	1/1	c0001	1179	387	95	69	172	12	37	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	c0002	1179	16	0	9	0	4	3	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	c0003	1179	2	0	2	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	c0004	1179	1	1	0	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	c0005	1179	1	0	1	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	c0006	1179	1	0	1	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCCIP_chr10_125818546_125841551	1/1	c0001	945	441	90	75	212	14	48	copy fasta	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	c0002	945	4	0	0	4	0	0	copy fasta	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	c0003	945	1	0	1	0	0	0	copy fasta	BCCIP	chr10	125818546	125841551
BCDIN3D_chr12_49831043_49848106	1/1	c0001	879	262	76	43	91	15	35	copy fasta	BCDIN3D	chr12	49831043	49848106