JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM176B_chr7_150786301_150805364	0/0	c0012	813	1	0	0	1	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0013	813	1	0	1	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0014	813	1	0	0	1	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0015	813	1	0	0	0	0	1	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0016	813	1	1	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0017	813	1	0	0	0	1	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0018	813	1	1	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	c0019	813	1	0	0	0	0	1	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM177_chr2_119674201_119687118	0/1	c0001	936	272	51	61	111	9	39	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0002	936	55	14	8	27	1	5	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0003	936	25	17	1	7	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	1/0	c0004	936	10	8	1	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0005	936	2	0	0	2	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0006	936	1	1	0	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0007	936	1	1	0	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0008	936	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0009	936	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0010	936	1	1	0	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0011	936	1	0	1	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0012	936	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0013	936	1	0	0	0	0	1	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0014	936	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0015	936	1	0	0	0	0	1	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0016	936	1	1	0	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	c0017	936	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM178A_chr2_39660917_39722963	1/1	c0001	894	293	87	60	107	6	31	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	c0002	894	1	0	0	0	0	1	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	c0003	894	1	1	0	0	0	0	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	c0004	894	1	0	0	1	0	0	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178B_chr7_141069064_141485380	0/0	c0001	885	39	30	4	2	0	3	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	c0002	885	33	19	7	5	0	2	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	c0003	885	5	1	3	1	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	c0004	885	1	1	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	c0005	885	1	0	0	0	0	1	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	c0006	885	1	1	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM179B_chr11_62782402_62795400	1/1	c0001	660	398	92	72	178	18	36	copy fasta	TMEM179B	chr11	62782402	62795400
TMEM179_chr14_104585864_104609772	0/0	c0001	702	207	62	32	78	11	24	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/1	c0002	702	170	28	32	92	3	14	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	c0003	702	21	0	10	10	0	1	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	c0004	702	4	4	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	c0005	702	3	3	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	c0006	702	1	0	0	0	0	1	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	c0007	702	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM17_chr2_62495218_62511195	0/0	c0001	597	133	21	34	68	1	9	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	1/0	c0002	597	114	18	21	58	6	10	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/1	c0003	597	109	34	16	33	7	18	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	c0004	597	91	6	11	66	2	6	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	c0005	597	13	13	0	0	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	c0006	597	7	0	2	0	2	3	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	c0007	597	3	2	1	0	0	0	copy fasta	TMEM17	chr2	62495218	62511195