JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM17_chr2_62495218_62511195	0/0	c0008	597	2	0	0	2	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	c0009	597	2	0	0	2	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	c0010	597	1	0	1	0	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	c0011	597	1	0	0	1	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM181_chr6_158555091_158640429	1/1	c0001	1428	322	82	72	117	12	37	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	c0002	1428	5	4	1	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	c0003	1428	2	0	2	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	c0004	1428	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	c0005	1428	1	1	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	c0006	1428	1	0	1	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	c0007	1428	1	1	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	c0008	1428	1	0	0	0	0	1	copy fasta	TMEM181	chr6	158555091	158640429
TMEM182_chr2_102757031_102822679	0/1	c0001	690	353	86	66	146	15	39	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	1/0	c0002	690	2	0	0	0	0	1	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	0/0	c0003	690	1	0	0	0	1	0	copy fasta	TMEM182	chr2	102757031	102822679
TMEM183A_chr1_203002374_203029848	1/1	c0001	1131	348	91	56	141	15	43	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	c0002	1131	72	5	17	45	3	2	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	c0003	1131	4	0	0	4	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	c0004	1131	2	2	0	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	c0005	1131	1	0	0	0	0	1	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	c0006	1131	1	0	1	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM184A_chr7_1537235_1561205	0/0	c0001	1245	167	39	27	81	10	10	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	1/1	c0002	1242	137	27	26	54	3	25	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0003	1245	57	15	9	22	0	11	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0004	1242	22	1	10	10	1	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0005	1245	8	0	0	8	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0006	1245	6	0	0	6	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0007	1242	5	4	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0008	1245	2	0	0	2	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0009	1245	2	0	0	0	2	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0010	1242	2	1	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0011	1242	2	2	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0012	1242	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0013	1242	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0014	1242	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0015	1242	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0016	1242	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0017	1242	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0018	1242	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0019	1245	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0020	1245	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	c0021	1242	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184B_chr22_38214291_38278010	1/1	c0001	1224	299	69	60	129	11	28	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	c0002	1224	16	5	0	1	0	10	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	c0003	1224	11	9	1	1	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	c0004	1224	8	4	2	1	0	1	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	c0005	1224	6	0	0	6	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	c0006	1224	5	0	0	5	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	c0007	1224	3	2	0	0	0	1	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	c0008	1224	3	0	0	0	3	0	copy fasta	TMEM184B	chr22	38214291	38278010