JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM184B_chr22_38214291_38278010	0/0	c0009	1224	2	1	1	0	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	c0010	1224	1	0	0	1	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184C_chr4_147612397_147641721	1/1	c0001	1317	335	94	64	133	12	30	copy fasta	TMEM184C	chr4	147612397	147641721
TMEM184C_chr4_147612397_147641721	0/0	c0002	1317	1	0	0	1	0	0	copy fasta	TMEM184C	chr4	147612397	147641721
TMEM185A_chrX_149591556_149636792	1/1	c0001	1053	222	59	38	93	9	21	copy fasta	TMEM185A	chrX	149591556	149636792
TMEM185A_chrX_149591556_149636792	0/0	c0002	1053	32	10	1	20	0	1	copy fasta	TMEM185A	chrX	149591556	149636792
TMEM185A_chrX_149591556_149636792	0/0	c0003	1053	4	3	1	0	0	0	copy fasta	TMEM185A	chrX	149591556	149636792
TMEM185A_chrX_149591556_149636792	0/0	c0004	1051	1	0	0	1	0	0	copy fasta	TMEM185A	chrX	149591556	149636792
TMEM185B_chr2_120212479_120228400	0/1	c0001	1053	231	29	45	117	11	28	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	1/0	c0002	1053	180	56	27	73	7	16	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	0/0	c0003	1053	7	5	2	0	0	0	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	0/0	c0004	1053	5	5	0	0	0	0	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	0/0	c0005	1053	1	1	0	0	0	0	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM186_chr16_8790180_8802639	1/1	c0001	642	452	98	83	210	14	45	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	c0002	642	1	0	0	0	0	1	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	c0003	642	1	0	0	1	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	c0004	642	1	0	1	0	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	c0005	642	1	0	0	1	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM187_chrX_153967754_153988194	0/0	c0001	786	110	8	14	78	0	10	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	1/1	c0002	786	106	20	21	40	9	14	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	c0003	786	42	39	3	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	c0004	786	15	3	4	8	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	c0005	786	7	6	1	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	c0006	786	1	0	1	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM18_chr2_658877_682406	1/1	c0001	423	396	72	76	186	17	43	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	c0002	423	45	28	8	2	0	7	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	c0003	423	1	0	0	0	1	0	copy fasta	TMEM18	chr2	658877	682406
TMEM190_chr19_55371826_55383246	1/1	c0001	534	322	85	60	118	13	44	copy fasta	TMEM190	chr19	55371826	55383246
TMEM190_chr19_55371826_55383246	0/0	c0002	534	9	6	1	0	1	1	copy fasta	TMEM190	chr19	55371826	55383246
TMEM190_chr19_55371826_55383246	0/0	c0003	534	3	3	0	0	0	0	copy fasta	TMEM190	chr19	55371826	55383246
TMEM190_chr19_55371826_55383246	0/0	c0004	534	1	0	1	0	0	0	copy fasta	TMEM190	chr19	55371826	55383246
TMEM190_chr19_55371826_55383246	0/0	c0005	534	1	0	0	0	0	1	copy fasta	TMEM190	chr19	55371826	55383246
TMEM191B_chr22_18522802_18535573	0/0	c0001	1044	23	7	5	10	0	1	copy fasta	TMEM191B	chr22	18522802	18535573
TMEM191B_chr22_18522802_18535573	1/0	c0002	1041	4	1	1	0	0	1	copy fasta	TMEM191B	chr22	18522802	18535573
TMEM191B_chr22_18522802_18535573	0/0	c0003	1044	2	2	0	0	0	0	copy fasta	TMEM191B	chr22	18522802	18535573
TMEM191C_chr22_21462387_21474935	0/1	c0001	909	362	88	61	167	15	30	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	1/0	c0002	909	26	0	0	15	0	10	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0003	909	9	0	5	0	2	2	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0004	909	4	0	0	4	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0005	909	3	3	0	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0006	884	2	0	2	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0007	909	2	0	2	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0008	909	2	2	0	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0009	909	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0010	909	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0011	909	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0012	909	1	1	0	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0013	909	1	0	0	0	1	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0014	909	1	1	0	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0015	909	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935