JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM191C_chr22_21462387_21474935	0/0	c0016	909	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0017	909	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	c0018	909	1	1	0	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM192_chr4_165065608_165117860	1/1	c0001	816	194	36	48	72	10	26	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	c0002	816	136	56	10	58	2	10	copy fasta	TMEM192	chr4	165065608	165117860
TMEM196_chr7_19714315_19778617	1/1	c0001	540	347	83	66	146	12	38	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	c0002	540	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM198_chr2_219539028_219555595	0/1	c0001	1083	193	27	37	93	6	29	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0002	1083	171	38	39	74	7	13	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	1/0	c0003	1083	13	12	0	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0004	1083	5	5	0	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0005	1083	4	4	0	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0006	1083	4	4	0	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0007	1083	2	0	0	2	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0008	1083	2	0	0	2	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0009	1083	1	0	1	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0010	1083	1	0	0	0	1	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0011	1083	1	0	0	0	0	1	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0012	1083	1	0	0	1	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0013	1083	1	0	0	0	0	1	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0014	1083	1	0	0	0	0	1	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0015	1083	1	1	0	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0016	1083	1	0	1	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0017	1083	1	1	0	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	c0018	1083	1	0	0	0	0	1	copy fasta	TMEM198	chr2	219539028	219555595
TMEM199_chr17_28352647_28368683	1/1	c0001	627	285	67	75	87	13	41	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	c0002	627	43	0	3	35	1	4	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	c0003	627	15	0	0	15	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	c0004	627	14	14	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	c0005	627	10	10	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	c0006	627	3	3	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	c0007	627	1	0	0	1	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	c0008	627	1	0	0	0	0	1	copy fasta	TMEM199	chr17	28352647	28368683
TMEM19_chr12_71681082_71710047	1/1	c0001	1011	380	86	58	175	16	43	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	c0002	1011	9	9	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	c0003	1011	2	0	0	2	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	c0004	1011	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	c0005	1011	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	c0006	1011	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	c0007	1011	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	c0008	1011	1	0	0	0	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM200A_chr6_130361017_130448067	1/1	c0001	1476	118	6	32	55	6	17	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0002	1476	110	32	10	55	0	13	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0003	1476	67	30	10	22	2	3	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0004	1476	3	2	1	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0005	1476	3	1	2	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0006	1476	2	2	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0007	1476	1	1	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0008	1476	1	1	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	c0009	1476	1	0	0	0	0	1	copy fasta	TMEM200A	chr6	130361017	130448067