JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM201_chr1_9583911_9619877	0/0	c0009	2001	2	0	0	2	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0010	2001	2	2	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0011	2001	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0012	2001	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0013	2001	1	0	0	0	0	1	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0014	2001	1	0	1	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0015	2001	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0016	2001	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0017	2001	1	0	0	0	0	1	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0018	2001	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0019	2001	1	0	0	0	0	1	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	c0020	2001	1	0	0	0	0	1	copy fasta	TMEM201	chr1	9583911	9619877
TMEM202_chr15_72393305_72413367	1/1	c0001	822	347	83	61	151	12	38	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	c0002	822	26	0	0	26	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	c0003	822	19	11	8	0	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	c0004	822	1	1	0	0	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	c0005	822	1	0	0	1	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	c0006	822	1	0	1	0	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	c0007	822	1	1	0	0	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM203_chr9_137199082_137210648	1/1	c0001	411	391	87	72	172	16	42	copy fasta	TMEM203	chr9	137199082	137210648
TMEM203_chr9_137199082_137210648	0/0	c0002	411	3	3	0	0	0	0	copy fasta	TMEM203	chr9	137199082	137210648
TMEM204_chr16_1528666_1560568	1/1	c0001	681	220	33	57	103	7	18	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	c0002	681	140	37	11	74	1	17	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	c0003	681	39	17	2	12	2	6	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	c0004	681	10	0	0	10	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	c0005	681	8	8	0	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	c0006	681	1	1	0	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	c0007	681	1	0	0	0	0	1	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	c0008	681	1	0	0	1	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM205_chr19_11337778_11351268	1/1	c0001	570	363	92	66	157	14	32	copy fasta	TMEM205	chr19	11337778	11351268
TMEM205_chr19_11337778_11351268	0/0	c0002	570	1	1	0	0	0	0	copy fasta	TMEM205	chr19	11337778	11351268
TMEM205_chr19_11337778_11351268	0/0	c0003	570	1	1	0	0	0	0	copy fasta	TMEM205	chr19	11337778	11351268
TMEM205_chr19_11337778_11351268	0/0	c0004	570	1	0	0	1	0	0	copy fasta	TMEM205	chr19	11337778	11351268
TMEM207_chr3_190423655_190454901	1/1	c0001	441	438	87	76	219	15	39	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	c0002	441	15	2	7	3	1	2	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	c0003	441	4	4	0	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	c0004	441	3	0	0	0	0	3	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	c0005	441	2	2	0	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	c0006	441	1	0	0	1	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	c0007	441	1	0	1	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	c0008	441	1	0	0	1	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	c0009	441	1	1	0	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM208_chr16_67222130_67234278	1/1	c0001	522	222	55	57	72	10	26	copy fasta	TMEM208	chr16	67222130	67234278
TMEM208_chr16_67222130_67234278	0/0	c0002	522	35	34	1	0	0	0	copy fasta	TMEM208	chr16	67222130	67234278
TMEM208_chr16_67222130_67234278	0/0	c0003	522	3	3	0	0	0	0	copy fasta	TMEM208	chr16	67222130	67234278
TMEM209_chr7_130159713_130210406	1/0	c0001	1686	218	76	52	54	9	26	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/1	c0002	1686	100	14	15	55	3	12	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	c0003	1686	7	0	3	4	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	c0004	1686	3	0	1	0	0	2	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	c0005	1686	2	0	2	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406