JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM209_chr7_130159713_130210406	0/0	c0006	1686	2	0	2	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	c0007	1686	1	0	0	1	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	c0008	1686	1	0	0	1	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	c0009	1686	1	0	1	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	c0010	1686	1	0	0	1	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM210_chr9_137165858_137177056	1/1	c0001	444	399	92	74	169	16	46	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	c0002	444	2	0	2	0	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	c0003	444	1	0	1	0	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	c0004	444	1	1	0	0	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	c0005	444	1	1	0	0	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	c0006	444	1	0	1	0	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	c0007	444	1	0	0	1	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM212_chr3_171838349_171864318	1/1	c0001	585	434	94	76	200	18	44	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	c0002	585	1	1	0	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	c0003	585	1	1	0	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM213_chr7_138792994_138811759	0/1	c0001	324	308	65	50	154	11	27	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	1/0	c0002	324	140	28	28	55	7	21	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	c0003	324	4	3	1	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	c0004	324	2	0	0	2	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	c0005	324	1	0	1	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	c0006	324	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM214_chr2_27027965_27046694	1/1	c0001	2070	242	41	42	132	9	16	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0002	2070	85	33	30	7	4	11	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0003	2070	15	10	5	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0004	2070	3	0	0	3	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0005	2070	2	2	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0006	2070	2	0	0	2	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0007	2070	2	0	2	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0008	2070	1	1	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0009	2070	1	1	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0010	2070	1	1	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0011	2070	1	1	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0012	2070	1	0	1	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0013	2070	1	0	0	1	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0014	2070	1	0	0	0	0	1	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0015	2070	1	0	0	0	1	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	c0016	2070	1	0	0	1	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM215_chr9_32778540_32794201	1/1	c0001	708	322	81	61	138	8	32	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	c0002	708	81	5	16	51	4	5	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	c0003	708	4	3	1	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	c0004	708	2	0	2	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	c0005	708	2	2	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	c0006	708	2	2	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	c0007	708	1	1	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	c0008	708	1	0	0	0	0	1	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	c0009	708	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM216_chr11_61387587_61403846	0/1	c0001	438	219	60	37	94	6	21	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	1/0	c0002	438	44	24	7	5	2	5	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	c0003	438	2	0	0	0	0	2	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	c0004	438	2	0	2	0	0	0	copy fasta	TMEM216	chr11	61387587	61403846