JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM216_chr11_61387587_61403846	0/0	c0005	438	1	0	0	1	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	c0006	438	1	0	0	1	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	c0007	438	1	0	0	1	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM217B_chr6_37207181_37263144	0/1	c0001	513	121	14	34	44	5	23	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	c0002	513	68	28	20	8	3	9	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	1/0	c0003	513	56	25	13	9	2	6	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	c0004	513	9	9	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	c0005	513	6	6	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	c0006	513	5	5	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	c0007	513	2	2	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	c0008	513	1	1	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	c0009	513	1	0	1	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	c0010	513	1	0	0	1	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	1/1	c0001	636	272	82	66	74	10	38	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	c0002	636	5	4	1	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	c0003	636	2	2	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	c0004	636	1	0	1	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	c0005	636	1	1	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	c0006	636	1	1	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM218_chr11_125089389_125116626	1/1	c0001	348	422	80	84	192	16	48	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	c0002	348	14	12	0	0	0	2	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	c0003	348	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	c0004	348	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM219_chr16_29957079_29978048	1/1	c0001	723	357	83	67	154	14	37	copy fasta	TMEM219	chr16	29957079	29978048
TMEM219_chr16_29957079_29978048	0/0	c0002	723	5	5	0	0	0	0	copy fasta	TMEM219	chr16	29957079	29978048
TMEM219_chr16_29957079_29978048	0/0	c0003	723	4	4	0	0	0	0	copy fasta	TMEM219	chr16	29957079	29978048
TMEM219_chr16_29957079_29978048	0/0	c0004	723	1	0	1	0	0	0	copy fasta	TMEM219	chr16	29957079	29978048
TMEM219_chr16_29957079_29978048	0/0	c0005	723	1	0	0	0	0	1	copy fasta	TMEM219	chr16	29957079	29978048
TMEM220_chr17_10708295_10735023	1/1	c0001	483	393	93	64	184	14	36	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	c0002	483	4	0	0	4	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	c0003	483	3	0	0	2	0	1	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	c0004	483	2	1	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	c0005	483	1	0	0	0	0	1	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	c0006	483	1	0	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM221_chr19_17430509_17453668	0/1	c0001	876	217	50	47	77	14	28	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0002	876	107	11	25	62	0	9	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	1/0	c0003	876	46	1	2	38	0	4	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0004	876	16	15	1	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0005	876	6	0	0	2	0	4	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0006	876	6	6	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0007	876	4	0	2	0	2	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0008	876	2	1	1	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0009	876	2	0	0	0	0	2	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0010	876	2	2	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0011	876	2	0	2	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0012	876	2	2	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0013	876	2	2	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0014	876	2	2	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0015	876	1	0	0	1	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0016	876	1	0	0	1	0	0	copy fasta	TMEM221	chr19	17430509	17453668