JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM221_chr19_17430509_17453668	0/0	c0017	876	1	0	0	0	0	1	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0018	876	1	1	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0019	876	1	1	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	c0020	876	1	0	0	1	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM222_chr1_27317163_27341400	1/1	c0001	627	359	91	66	150	15	35	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	c0002	627	4	3	1	0	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	c0003	627	4	0	2	0	1	1	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	c0004	627	2	0	1	1	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	c0005	627	2	0	0	0	2	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	c0006	627	1	0	0	1	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM223_chr11_62784971_62797006	1/1	c0001	609	334	70	63	152	15	32	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	c0002	609	57	15	5	34	2	1	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	c0003	609	8	7	1	0	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	c0004	609	3	3	0	0	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	c0005	609	3	0	0	3	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	c0006	609	2	1	0	0	1	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	c0007	609	1	0	0	0	0	1	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	c0008	609	1	0	0	1	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	c0009	609	1	0	1	0	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM225B_chr7_99593267_99616045	1/1	c0001	666	361	91	54	160	14	40	copy fasta	TMEM225B	chr7	99593267	99616045
TMEM225B_chr7_99593267_99616045	0/0	c0002	666	1	1	0	0	0	0	copy fasta	TMEM225B	chr7	99593267	99616045
TMEM225_chr11_123877920_123890670	0/0	c0001	678	377	87	65	174	10	41	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0002	678	54	0	10	38	2	4	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0003	678	15	1	4	7	1	2	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0004	678	2	2	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0005	678	2	0	0	2	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0006	678	2	0	0	2	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0007	678	1	0	0	1	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0008	678	1	0	0	0	1	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0009	678	1	1	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0010	678	1	1	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0011	678	1	1	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0012	678	1	0	0	0	0	1	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0013	678	1	1	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	c0014	678	1	0	1	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM229A_chr7_124025921_124038067	1/1	c0001	1143	290	49	55	134	14	36	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0002	1137	29	19	6	0	2	2	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0003	1140	20	5	0	12	0	3	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0004	1140	6	6	0	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0005	1146	5	0	0	5	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0006	1137	4	4	0	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0007	1137	2	1	1	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0008	1140	2	0	0	0	0	2	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0009	1140	1	0	0	0	0	1	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0010	1143	1	0	0	1	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0011	1137	1	1	0	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0012	1143	1	0	0	1	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0013	1143	1	0	0	1	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	c0014	1140	1	1	0	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229B_chr14_67465269_67493721	1/1	c0001	504	435	100	78	195	18	42	copy fasta	TMEM229B	chr14	67465269	67493721