JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM229B_chr14_67465269_67493721	0/0	c0002	504	4	0	4	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	c0003	504	3	0	0	3	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM230_chr20_5094850_5118076	1/1	c0001	552	367	69	61	188	15	32	copy fasta	TMEM230	chr20	5094850	5118076
TMEM230_chr20_5094850_5118076	0/0	c0002	552	26	18	7	0	1	0	copy fasta	TMEM230	chr20	5094850	5118076
TMEM230_chr20_5094850_5118076	0/0	c0003	552	7	1	5	0	1	0	copy fasta	TMEM230	chr20	5094850	5118076
TMEM230_chr20_5094850_5118076	0/0	c0004	552	2	0	1	0	1	0	copy fasta	TMEM230	chr20	5094850	5118076
TMEM230_chr20_5094850_5118076	0/0	c0005	552	1	0	0	0	0	1	copy fasta	TMEM230	chr20	5094850	5118076
TMEM230_chr20_5094850_5118076	0/0	c0006	552	1	0	0	0	0	1	copy fasta	TMEM230	chr20	5094850	5118076
TMEM231_chr16_75531741_75561252	1/1	c0001	951	220	67	52	52	17	30	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0002	951	111	1	28	65	0	17	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0003	951	12	5	0	6	1	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0004	951	9	0	0	9	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0005	951	4	4	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0006	951	3	3	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0007	951	2	2	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0008	951	2	0	0	2	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0009	951	2	2	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0010	951	1	1	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0011	951	1	0	0	0	0	1	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	c0012	951	1	1	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM232_chr5_110414496_110731671	1/0	c0001	1974	121	34	17	49	7	13	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0002	1974	42	3	9	28	0	2	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0003	1974	13	0	4	9	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0004	1974	13	12	1	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0005	1974	7	1	4	1	1	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0006	1974	5	5	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0007	1974	5	3	2	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0008	1974	4	4	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0009	1974	4	0	1	1	2	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0010	1974	4	3	1	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0011	1974	3	2	1	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0012	1974	3	3	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0013	1974	2	0	0	2	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0014	1974	2	2	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0015	1974	2	2	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0016	1974	2	2	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0017	1974	2	1	0	1	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0018	1974	2	2	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0019	1974	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0020	1974	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/1	c0021	1974	1	0	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0022	1974	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0023	1974	1	0	0	1	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0024	1974	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0025	1974	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0026	1974	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0027	1974	1	0	0	0	0	1	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0028	1974	1	0	0	1	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0029	1974	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0030	1974	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671