JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCDIN3D_chr12_49831043_49848106	0/0	c0002	879	142	12	23	100	0	7	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0003	879	5	5	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0004	879	3	0	1	0	1	1	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0005	879	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0006	879	1	1	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0007	879	1	1	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0008	879	1	0	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0009	879	1	0	0	0	0	1	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0010	879	1	0	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0011	879	1	0	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	c0012	879	1	1	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCHE_chr3_165767904_165842423	1/0	c0001	1809	242	76	47	96	7	15	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/1	c0002	1809	52	7	4	31	1	8	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	c0003	1809	5	4	1	0	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	c0004	1809	1	0	0	0	0	1	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	c0005	1809	1	0	0	1	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	c0006	1809	1	0	0	1	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	c0007	1809	1	0	0	1	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	c0008	1809	1	1	0	0	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCKDHA_chr19_41392818_41430002	0/0	c0001	1338	187	45	29	73	10	30	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	1/0	c0002	1338	131	22	22	66	4	16	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/1	c0003	1338	11	0	6	0	2	2	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0004	1338	8	8	0	0	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0005	1338	7	0	0	7	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0006	1338	7	7	0	0	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0007	1338	7	0	0	7	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0008	1338	6	5	1	0	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0009	1338	3	3	0	0	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0010	1338	1	0	1	0	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0011	1338	1	1	0	0	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0012	1338	1	0	0	1	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0013	1338	1	0	0	1	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0014	1338	1	1	0	0	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0015	1338	1	0	0	1	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	c0016	1338	1	0	1	0	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHB_chr6_80101671_80351270	1/1	c0001	1179	287	84	38	123	8	32	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	c0002	1179	3	3	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	c0003	1179	2	1	0	1	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	c0004	1179	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	c0005	1179	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDK_chr16_31103386_31117791	1/1	c0001	1239	179	77	42	24	9	25	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	c0002	1239	116	10	26	74	3	3	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	c0003	1239	2	2	0	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	c0004	1239	1	0	1	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	c0005	1239	1	0	1	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	c0006	1239	1	1	0	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCL10_chr1_85260776_85281632	1/1	c0001	702	307	72	60	140	11	22	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	c0002	702	68	26	11	16	4	11	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	c0003	702	53	0	2	43	1	7	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	c0004	702	18	0	5	11	0	2	copy fasta	BCL10	chr1	85260776	85281632