JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM232_chr5_110414496_110731671	0/0	c0031	1974	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	c0032	1974	1	0	0	1	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM233_chr12_119588774_119648075	0/1	c0001	330	197	68	37	54	9	28	copy fasta	TMEM233	chr12	119588774	119648075
TMEM233_chr12_119588774_119648075	1/0	c0002	330	108	22	16	58	3	8	copy fasta	TMEM233	chr12	119588774	119648075
TMEM233_chr12_119588774_119648075	0/0	c0003	330	2	0	2	0	0	0	copy fasta	TMEM233	chr12	119588774	119648075
TMEM233_chr12_119588774_119648075	0/0	c0004	330	1	0	1	0	0	0	copy fasta	TMEM233	chr12	119588774	119648075
TMEM234_chr1_32211200_32227353	1/1	c0001	423	395	94	68	181	14	36	copy fasta	TMEM234	chr1	32211200	32227353
TMEM234_chr1_32211200_32227353	0/0	c0002	402	2	0	0	2	0	0	copy fasta	TMEM234	chr1	32211200	32227353
TMEM234_chr1_32211200_32227353	0/0	c0003	423	1	0	0	1	0	0	copy fasta	TMEM234	chr1	32211200	32227353
TMEM234_chr1_32211200_32227353	0/0	c0004	423	1	0	1	0	0	0	copy fasta	TMEM234	chr1	32211200	32227353
TMEM234_chr1_32211200_32227353	0/0	c0005	423	1	0	1	0	0	0	copy fasta	TMEM234	chr1	32211200	32227353
TMEM235_chr17_78226631_78245987	1/1	c0001	672	306	44	62	156	12	30	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0002	672	77	4	9	52	3	9	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0003	672	32	24	6	0	1	1	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0004	672	18	0	7	0	2	9	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0005	672	11	10	1	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0006	672	8	7	0	0	0	1	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0007	672	8	5	3	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0008	672	4	4	0	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0009	672	1	1	0	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0010	672	1	1	0	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0011	672	1	0	0	1	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	c0012	672	1	0	0	1	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM236_chr10_17747201_17805868	1/1	c0001	1056	272	59	55	119	8	29	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0002	1056	61	22	8	23	3	5	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0003	1056	61	0	15	34	6	6	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0004	1056	5	5	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0005	1056	2	2	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0006	1056	2	2	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0007	1056	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0008	1056	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0009	1056	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0010	1056	1	0	0	0	1	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	c0011	1056	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM237_chr2_201615186_201648503	1/1	c0001	1227	352	61	69	164	15	41	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	c0002	1227	38	8	0	30	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	c0003	1227	24	20	3	0	1	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	c0004	1227	2	2	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	c0005	1227	1	1	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	c0006	1227	1	0	0	0	0	1	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	c0007	1227	1	1	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	c0008	1227	1	1	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM238L_chr17_10789908_10809099	0/1	c0001	240	280	29	58	154	14	24	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	1/0	c0002	240	187	68	28	64	4	22	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	c0003	240	1	1	0	0	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	c0004	240	1	1	0	0	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	c0005	240	1	1	0	0	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238_chr19_55374244_55389292	0/1	c0001	531	203	18	44	86	13	41	copy fasta	TMEM238	chr19	55374244	55389292
TMEM238_chr19_55374244_55389292	1/0	c0002	531	120	74	15	23	1	6	copy fasta	TMEM238	chr19	55374244	55389292
TMEM238_chr19_55374244_55389292	0/0	c0003	531	1	0	0	1	0	0	copy fasta	TMEM238	chr19	55374244	55389292