JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM238_chr19_55374244_55389292	0/0	c0004	531	1	1	0	0	0	0	copy fasta	TMEM238	chr19	55374244	55389292
TMEM238_chr19_55374244_55389292	0/0	c0005	531	1	1	0	0	0	0	copy fasta	TMEM238	chr19	55374244	55389292
TMEM238_chr19_55374244_55389292	0/0	c0006	531	1	0	0	0	0	1	copy fasta	TMEM238	chr19	55374244	55389292
TMEM238_chr19_55374244_55389292	0/0	c0007	531	1	0	1	0	0	0	copy fasta	TMEM238	chr19	55374244	55389292
TMEM239_chr20_2811364_2823062	1/1	c0001	459	389	90	73	172	11	41	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	c0002	459	5	5	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	c0003	459	2	0	1	0	1	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	c0004	459	2	2	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	c0005	459	1	0	0	0	0	1	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	c0006	459	1	1	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM240_chr1_1529778_1545624	1/1	c0001	522	414	88	85	177	15	47	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	c0002	522	4	0	1	0	1	2	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	c0003	522	2	2	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	c0004	522	2	2	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	c0005	522	1	1	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	c0006	522	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	c0007	522	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	c0008	522	1	0	0	0	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	c0009	522	1	1	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	c0010	522	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM241_chr18_23291013_23442961	1/0	c0001	891	209	41	45	89	8	25	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/1	c0002	891	121	30	21	51	6	12	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	c0003	891	6	6	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	c0004	891	2	2	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	c0005	891	1	0	0	0	0	1	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	c0006	891	1	1	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM242_chr6_157284025_157328519	1/1	c0001	426	313	69	57	135	10	40	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	c0002	426	17	16	1	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	c0003	426	5	5	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	c0004	426	5	0	3	0	0	2	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	c0005	426	2	2	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	c0006	426	1	0	1	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	c0007	426	1	0	0	1	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM243_chr7_87191160_87224732	1/1	c0001	357	397	91	68	190	14	32	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	c0002	357	1	0	0	1	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	c0003	357	1	1	0	0	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	c0004	357	1	0	0	1	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM244_chr6_129826244_129866315	1/0	c0001	387	154	30	32	73	3	15	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	c0002	387	83	5	4	61	2	11	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/1	c0003	387	72	45	12	0	3	11	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	c0004	387	70	8	23	25	4	10	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	c0005	387	4	4	0	0	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	c0006	387	1	0	0	1	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	c0007	387	1	0	0	1	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	c0008	387	1	0	0	1	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	c0009	387	1	0	1	0	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	c0010	387	1	0	0	0	0	1	copy fasta	TMEM244	chr6	129826244	129866315
TMEM245_chr9_109010135_109124947	1/1	c0001	2640	228	52	39	108	4	23	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0002	2640	75	0	23	43	4	5	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0003	2640	31	0	0	30	0	1	copy fasta	TMEM245	chr9	109010135	109124947