JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM245_chr9_109010135_109124947	0/0	c0004	2640	30	14	2	0	3	11	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0005	2640	15	0	2	13	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0006	2640	13	12	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0007	2640	8	0	0	0	1	7	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0008	2640	7	5	2	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0009	2640	3	0	2	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0010	2640	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0011	2640	2	2	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0012	2640	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0013	2640	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0014	2640	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0015	2640	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0016	2640	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0017	2640	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0018	2640	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	c0019	2640	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM248_chr7_66916225_66963551	1/1	c0001	945	394	73	66	195	16	42	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	c0002	945	2	0	0	2	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	c0003	945	1	0	0	1	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	c0004	945	1	1	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM249_chr8_144348228_144359931	1/0	c0001	708	205	34	39	93	8	30	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/1	c0002	708	159	56	27	58	8	9	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	c0003	708	6	4	2	0	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	c0004	708	2	2	0	0	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	c0005	720	1	1	0	0	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	c0006	708	1	0	0	1	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	c0007	708	1	1	0	0	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	c0008	708	1	0	0	0	0	1	copy fasta	TMEM249	chr8	144348228	144359931
TMEM250_chr9_136109589_136123875	1/1	c0001	420	429	98	78	185	18	48	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	c0002	420	5	0	0	5	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM252_chr9_68531580_68545883	1/1	c0001	513	419	92	71	194	18	42	copy fasta	TMEM252	chr9	68531580	68545883
TMEM252_chr9_68531580_68545883	0/0	c0002	513	3	2	1	0	0	0	copy fasta	TMEM252	chr9	68531580	68545883
TMEM253_chr14_21096066_21108724	0/1	c0001	654	251	73	48	91	10	28	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	1/0	c0002	654	88	4	5	60	2	16	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	0/0	c0003	654	54	12	19	19	0	4	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	0/0	c0004	654	2	1	1	0	0	0	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	0/0	c0005	654	1	0	1	0	0	0	copy fasta	TMEM253	chr14	21096066	21108724
TMEM254_chr10_80073665_80097551	1/0	c0001	372	205	64	45	71	5	19	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/1	c0002	372	183	26	25	105	3	23	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	c0003	372	1	1	0	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	c0004	372	1	1	0	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM255A_chrX_120253650_120316461	1/1	c0001	978	287	63	53	131	9	29	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	c0002	978	12	11	1	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	c0003	979	1	0	0	1	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	c0004	978	1	0	0	1	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	c0005	978	1	0	0	0	0	1	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	c0006	978	1	0	0	1	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255B_chr13_113754226_113821995	1/0	c0001	981	161	30	42	59	9	20	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0002	981	36	1	11	16	0	8	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0003	971	20	19	1	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995