JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM255B_chr13_113754226_113821995	0/1	c0004	971	13	4	4	0	2	2	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0005	981	4	0	4	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0006	981	4	4	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0007	981	3	0	0	3	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0008	981	3	0	0	0	0	3	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0009	981	3	3	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0010	971	2	2	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0011	981	2	2	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0012	976	1	0	0	0	0	1	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0013	981	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0014	981	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0015	981	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0016	981	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0017	981	1	0	0	1	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0018	971	1	0	0	0	1	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0019	981	1	0	0	1	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	c0020	981	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM256_chr17_7397975_7409097	1/1	c0001	342	383	92	76	158	14	41	copy fasta	TMEM256	chr17	7397975	7409097
TMEM256_chr17_7397975_7409097	0/0	c0002	342	8	7	1	0	0	0	copy fasta	TMEM256	chr17	7397975	7409097
TMEM256_chr17_7397975_7409097	0/0	c0003	342	6	1	4	0	0	1	copy fasta	TMEM256	chr17	7397975	7409097
TMEM256_chr17_7397975_7409097	0/0	c0004	342	1	0	1	0	0	0	copy fasta	TMEM256	chr17	7397975	7409097
TMEM258_chr11_61783949_61797599	1/1	c0001	240	330	92	62	124	18	32	copy fasta	TMEM258	chr11	61783949	61797599
TMEM259_chr19_1004653_1026123	1/1	c0001	1863	144	15	37	69	6	15	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0002	1863	119	27	24	46	8	14	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0003	1863	55	10	5	34	0	6	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0004	1863	22	11	6	1	0	4	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0005	1863	20	0	0	17	0	3	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0006	1863	15	12	0	0	1	2	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0007	1863	12	2	0	2	3	5	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0008	1863	11	10	1	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0009	1863	9	7	2	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0010	1863	4	0	0	4	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0011	1863	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0012	1863	1	0	0	0	0	1	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0013	1863	1	0	1	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0014	1863	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0015	1863	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0016	1863	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0017	1863	1	0	1	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0018	1863	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0019	1863	1	0	1	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0020	1863	1	0	1	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0021	1863	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0022	1863	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0023	1863	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0024	1863	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0025	1863	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0026	1863	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0027	1863	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	c0028	1863	1	0	1	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123