JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM259_chr19_1004653_1026123	0/0	c0029	1863	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM25_chr11_118526192_118540829	1/0	c0001	1101	145	47	38	30	6	23	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0002	1101	110	21	25	57	3	4	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0003	1101	108	8	6	74	1	19	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0004	1101	10	10	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0005	1101	7	7	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0006	1101	4	0	0	4	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/1	c0007	1101	3	0	2	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0008	1101	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0009	1101	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0010	1073	1	0	1	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0011	1101	1	0	0	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0012	1101	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0013	1101	1	0	0	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0014	1101	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0015	1101	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0016	1101	1	0	0	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0017	1101	1	0	0	0	0	1	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	c0018	1101	1	0	0	0	0	1	copy fasta	TMEM25	chr11	118526192	118540829
TMEM260_chr14_56574798_56654515	0/0	c0001	2124	124	36	12	57	5	14	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0002	2124	75	4	17	44	2	8	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0003	2124	34	1	7	26	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0004	2124	32	19	3	7	1	2	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	1/1	c0005	2124	29	12	5	0	1	9	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0006	2124	25	1	3	21	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0007	2124	24	6	8	1	3	6	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0008	2124	7	5	2	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0009	2124	2	1	1	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0010	2124	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0011	2124	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0012	2124	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0013	2124	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0014	2124	1	0	0	0	0	1	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0015	2124	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0016	2124	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0017	2124	1	0	1	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0018	2124	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0019	2124	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0020	2124	1	0	1	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	c0021	2124	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM262_chr11_65083376_65094110	0/0	c0001	351	282	86	41	111	8	36	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	c0002	351	85	4	29	38	7	7	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/1	c0003	351	6	0	3	0	1	1	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	1/0	c0004	351	4	3	0	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	c0005	351	1	1	0	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	c0006	351	1	0	1	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	c0007	351	1	1	0	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	c0008	351	1	0	0	1	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	c0009	351	1	1	0	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM263_chr12_106950907_106979035	1/1	c0001	351	383	82	65	185	14	35	copy fasta	TMEM263	chr12	106950907	106979035