JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM263_chr12_106950907_106979035	0/0	c0002	351	6	0	3	3	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	c0003	351	1	0	0	0	0	1	copy fasta	TMEM263	chr12	106950907	106979035
TMEM265_chr16_30735642_30750196	1/1	c0001	327	284	86	62	86	12	36	copy fasta	TMEM265	chr16	30735642	30750196
TMEM266_chr15_76054985_76209963	1/1	c0001	1572	170	66	28	52	7	15	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	c0002	1572	99	17	22	47	5	8	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	c0003	1572	1	1	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	c0004	1572	1	0	0	0	0	1	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	c0005	1572	1	1	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	c0006	1572	1	1	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	c0007	1572	1	0	0	1	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM267_chr5_43439252_43488865	1/1	c0001	648	332	82	68	124	14	42	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	c0002	648	2	2	0	0	0	0	copy fasta	TMEM267	chr5	43439252	43488865
TMEM268_chr9_114606291_114651422	1/1	c0001	1029	363	83	74	150	14	40	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0002	1029	23	0	0	21	0	2	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0003	1029	3	0	0	3	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0004	1029	3	3	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0005	1029	3	0	0	3	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0006	1029	2	2	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0007	1029	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0008	1029	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0009	1029	1	1	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0010	1029	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0011	1029	1	0	0	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0012	1029	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0013	1029	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0014	1029	1	0	0	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	c0015	1029	1	1	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM269_chr1_42779991_42805827	1/1	c0001	612	395	78	68	187	14	46	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	c0002	612	5	4	1	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	c0003	612	5	5	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	c0004	612	3	2	1	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	c0005	612	1	1	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	c0006	612	1	0	0	1	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM26_chr10_61401642_61458381	1/1	c0001	1107	284	51	57	132	9	33	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	c0002	1107	69	37	8	18	3	3	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	c0003	1107	1	0	1	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	c0004	1107	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	c0005	1107	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	c0006	1107	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	c0007	1107	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM270_chr7_73856159_73870890	0/1	c0001	798	117	19	28	52	2	15	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	1/0	c0002	798	95	29	13	39	3	10	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0003	798	65	27	16	15	0	7	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0004	798	37	1	7	25	1	3	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0005	798	8	3	0	2	2	1	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0006	798	6	0	3	1	0	2	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0007	798	6	1	5	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0008	798	4	0	0	0	0	4	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0009	798	3	3	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0010	798	3	1	1	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890