JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM270_chr7_73856159_73870890	0/0	c0011	798	2	0	2	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0012	798	2	1	1	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0013	798	2	0	0	1	0	1	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0014	798	2	0	0	1	0	1	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0015	798	2	0	0	0	0	2	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0016	798	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0017	798	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0018	798	1	1	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0019	798	1	0	1	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0020	798	1	0	1	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0021	798	1	1	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0022	798	1	1	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0023	798	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0024	798	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0025	798	1	1	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0026	798	1	1	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	c0027	798	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM271_chr4_568880_581295	1/1	c0001	1158	320	73	56	150	11	28	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0002	1182	10	2	2	3	1	2	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0003	1134	6	2	0	3	0	1	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0004	1134	4	2	1	1	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0005	1158	3	3	0	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0006	1146	2	2	0	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0007	1158	2	0	0	2	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0008	1158	1	0	0	1	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0009	1207	1	0	0	0	0	1	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0010	1158	1	0	1	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0011	1158	1	0	0	1	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	c0012	1134	1	0	0	1	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM272_chr13_51808347_51850177	1/1	c0001	564	420	90	86	177	18	47	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	c0002	564	5	5	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	c0003	564	3	0	0	3	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	c0004	564	2	0	0	1	0	1	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	c0005	564	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	c0006	564	1	0	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM273_chr10_49149736_49193391	1/0	c0001	390	300	67	60	123	13	36	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	c0002	390	16	14	2	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	c0003	390	14	1	0	13	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/1	c0004	390	13	1	8	0	2	1	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	c0005	390	6	0	1	0	3	2	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	c0006	390	6	6	0	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	c0007	390	2	2	0	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	c0008	390	2	1	1	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	c0009	390	1	0	0	0	0	1	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	c0010	390	1	1	0	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	c0011	390	1	1	0	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM275_chr1_46527166_46540515	1/1	c0001	534	253	43	42	123	11	32	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	c0002	534	172	51	28	73	4	16	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	c0003	506	3	0	2	1	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	c0004	534	2	2	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515