JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM275_chr1_46527166_46540515	0/0	c0005	534	1	0	0	1	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	c0006	534	1	1	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	c0007	519	1	1	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	c0008	534	1	0	0	0	1	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM276_chr8_144458825_144470492	0/1	c0001	579	332	75	73	130	13	40	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	1/0	c0002	579	56	5	5	45	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	c0003	579	8	8	0	0	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	c0004	579	4	4	0	0	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	c0005	579	4	0	0	4	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	c0006	579	3	0	2	0	1	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	c0007	579	1	0	0	1	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM30A_chr6_75247924_75289792	1/1	c0001	1086	205	46	36	78	10	33	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	c0002	1086	73	36	3	33	0	1	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	c0003	1086	2	2	0	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	c0004	1086	1	0	0	1	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	c0005	1086	1	0	1	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30B_chr14_61272370_61286338	0/1	c0001	1056	340	69	58	172	12	28	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	1/0	c0002	1056	84	15	13	41	4	10	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	c0003	1056	14	13	1	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	c0004	1056	4	0	4	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	c0005	1056	3	0	0	3	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	c0006	1056	1	1	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	c0007	1056	1	0	0	1	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	c0008	1056	1	0	0	1	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM31_chrX_103705909_103719032	1/1	c0001	507	309	67	60	143	9	28	copy fasta	TMEM31	chrX	103705909	103719032
TMEM31_chrX_103705909_103719032	0/0	c0002	507	5	5	0	0	0	0	copy fasta	TMEM31	chrX	103705909	103719032
TMEM33_chr4_41930429_41965803	1/1	c0001	744	193	82	46	29	6	28	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	c0002	744	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	c0003	744	1	0	0	1	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	c0004	744	1	0	0	0	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	c0005	744	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	c0006	744	1	0	0	0	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM35A_chrX_101073879_101101367	1/1	c0001	504	321	78	57	139	11	34	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	c0002	505	1	0	0	1	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35B_chr1_34976380_34990347	1/1	c0001	465	385	79	63	191	14	36	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	c0002	465	17	14	1	0	0	2	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	c0003	465	7	5	2	0	0	0	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	c0004	465	1	1	0	0	0	0	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	c0005	465	1	0	0	1	0	0	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	c0006	465	1	1	0	0	0	0	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM37_chr2_119426854_119443504	0/0	c0001	579	366	83	62	173	15	33	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	1/1	c0002	573	50	4	14	20	1	9	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	c0003	579	5	4	1	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	c0004	579	5	1	1	0	0	3	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	c0005	579	2	2	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	c0006	579	1	0	0	0	0	1	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	c0007	593	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	c0008	631	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	c0009	547	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM38A_chr19_16656139_16695023	1/0	c0001	900	248	77	51	79	7	33	copy fasta	TMEM38A	chr19	16656139	16695023