JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM38A_chr19_16656139_16695023	0/0	c0002	900	69	7	9	47	2	4	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	c0003	900	7	7	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	c0004	900	3	1	2	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/1	c0005	900	2	0	0	0	1	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	c0006	900	1	1	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	c0007	900	1	1	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	c0008	900	1	0	0	0	0	1	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38B_chr9_105689541_105781629	1/1	c0001	876	339	80	63	163	6	25	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	c0002	876	8	8	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	c0003	876	4	3	1	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	c0004	876	2	0	2	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	c0005	876	1	0	0	0	0	1	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	c0006	876	1	0	0	1	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	c0007	876	1	1	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM39A_chr3_119423949_119468615	1/1	c0001	1467	376	84	66	168	13	43	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	c0002	1467	20	2	3	9	1	5	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	c0003	1467	2	2	0	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	c0004	1467	1	0	1	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	c0005	1467	1	0	0	1	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39B_chr1_32067939_32107863	1/1	c0001	1479	247	62	43	104	9	27	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	c0002	1479	74	15	16	34	1	8	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	c0003	1479	9	8	1	0	0	0	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	c0004	1479	2	0	2	0	0	0	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	c0005	1479	1	0	0	1	0	0	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	c0006	1479	1	0	0	0	0	1	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	c0007	1479	1	0	0	1	0	0	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	c0008	1479	1	1	0	0	0	0	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM40_chr3_12728528_12764259	1/1	c0001	702	321	87	63	121	12	36	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	c0002	702	8	4	4	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	c0003	702	6	0	1	5	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	c0004	702	6	6	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	c0005	702	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	c0006	702	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	c0007	702	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM41A_chr3_185484601_185504035	1/1	c0001	795	385	87	72	166	14	44	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	c0002	795	2	0	0	2	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	c0003	795	2	0	0	0	2	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	c0004	795	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	c0005	795	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	c0006	795	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	c0007	795	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	c0008	795	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	c0009	795	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	c0010	795	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41B_chr11_9275654_9319593	1/1	c0001	876	306	68	59	120	10	47	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	c0002	876	23	0	2	21	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	c0003	876	17	16	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	c0004	876	12	1	7	4	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	c0005	876	5	3	2	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	c0006	876	4	3	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593