JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM41B_chr11_9275654_9319593	0/0	c0007	876	1	0	0	0	0	1	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	c0008	876	1	1	0	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	c0009	876	1	0	0	1	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM42_chr3_44856912_44870664	1/1	c0001	480	360	94	69	139	13	43	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	c0002	480	23	3	11	8	1	0	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	c0003	480	1	0	0	0	0	1	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	c0004	480	1	0	0	1	0	0	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	c0005	480	1	1	0	0	0	0	copy fasta	TMEM42	chr3	44856912	44870664
TMEM43_chr3_14120052_14148680	1/0	c0001	1203	174	46	41	53	8	25	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/1	c0002	1203	137	29	27	62	2	16	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0003	1203	64	11	10	42	0	1	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0004	1203	6	4	0	0	0	2	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0005	1203	4	1	1	0	2	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0006	1203	3	3	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0007	1203	3	3	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0008	1203	2	0	0	2	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0009	1203	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0010	1203	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0011	1203	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0012	1203	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0013	1203	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0014	1203	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0015	1203	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0016	1203	1	0	1	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0017	1203	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0018	1203	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0019	1203	1	0	0	0	0	1	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0020	1203	1	0	0	0	0	1	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	c0021	1203	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM44_chr3_194582678_194638419	0/0	c0001	1287	113	22	30	46	1	14	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/1	c0002	1287	106	21	15	52	3	14	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0003	1287	80	13	13	38	7	9	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	1/0	c0004	1287	23	6	6	8	1	1	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0005	1287	18	0	1	15	0	2	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0006	1287	15	4	3	3	0	5	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0007	1287	15	15	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0008	1287	5	0	5	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0009	1287	4	4	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0010	1287	4	4	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0011	1287	2	0	0	0	0	2	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0012	1287	2	0	2	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0013	1287	2	2	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0014	1287	2	2	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0015	1287	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0016	1287	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0017	1287	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0018	1287	1	0	0	0	0	1	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0019	1287	1	0	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0020	1287	1	0	0	1	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0021	1287	1	0	0	1	0	0	copy fasta	TMEM44	chr3	194582678	194638419