Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABRAXAS1_chr4_83454517_83490100	0/0	c0004	1230	5	0	3	0	2	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	c0005	1230	3	3	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	c0006	1230	1	0	0	1	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	c0007	1230	1	1	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	c0008	1230	1	0	0	0	0	1	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS2_chr10_124796819_124841667	1/0	c0001	1248	183	66	22	72	7	15	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/1	c0002	1248	159	13	34	79	7	25	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	c0003	1248	3	0	0	0	0	3	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	c0004	1248	3	3	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	c0005	1248	2	0	0	1	0	1	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRA_chr8_106754483_106775244	1/1	c0001	1146	212	42	39	98	9	22	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0002	1146	119	47	19	43	2	8	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0003	1146	73	3	12	46	2	10	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0004	1146	19	2	7	9	0	1	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0005	1146	9	0	3	0	3	3	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0006	1146	2	2	0	0	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0007	1146	2	0	0	2	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0008	1146	1	0	0	1	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0009	1146	1	0	0	1	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0010	1146	1	0	0	0	1	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	c0011	1146	1	0	0	0	1	0	copy fasta	ABRA	chr8	106754483	106775244
ABR_chr17_998519_1184981	0/1	c0001	2580	285	58	60	117	11	38	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0002	2580	21	11	8	1	1	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0003	2580	16	15	1	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0004	2580	3	3	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0005	2580	2	0	2	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0006	2580	1	1	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0007	2580	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0008	2580	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0009	2580	1	1	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0010	2580	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0011	2580	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0012	2580	1	0	1	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0013	2580	1	1	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0014	2580	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	c0015	2580	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABT1_chr6_26591953_26605739	0/0	c0001	819	206	48	32	95	7	24	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	1/0	c0002	819	90	17	28	31	2	11	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/1	c0003	819	85	25	10	39	2	8	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	c0004	819	18	0	4	11	3	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	c0005	819	3	0	0	0	0	3	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	c0006	819	3	1	2	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	c0007	819	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	c0008	819	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	c0009	819	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	c0010	819	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	c0011	819	1	1	0	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABTB1_chr3_127667952_127685926	1/1	c0001	1437	372	76	63	186	12	33	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0002	1437	35	9	13	2	3	8	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0003	1437	6	0	4	0	2	0	copy fasta	ABTB1	chr3	127667952	127685926