JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCL11A_chr2_60452194_60558654	0/1	c0001	2508	213	65	42	66	10	29	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	1/0	c0002	2508	29	4	10	0	3	11	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	c0003	2508	13	0	7	6	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	c0004	2508	2	2	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	c0005	2508	1	0	0	0	1	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	c0006	2508	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	c0007	2508	1	0	1	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	c0008	2508	1	0	0	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	c0009	2508	1	0	0	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11B_chr14_99164287_99277197	1/1	c0001	2685	249	66	50	88	8	35	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	c0002	2685	84	20	17	35	4	8	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	c0003	2685	6	1	3	0	0	2	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	c0004	2685	3	3	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	c0005	2685	2	2	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	c0006	2685	2	2	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	c0007	2685	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	c0008	2685	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	c0009	2685	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	c0010	2685	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL2A1_chr15_79955892_79976196	1/0	c0001	528	210	32	53	80	8	36	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/1	c0002	528	95	5	15	55	10	9	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	c0003	528	73	5	3	63	0	2	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	c0004	528	45	40	5	0	0	0	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	c0005	528	11	9	2	0	0	0	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	c0006	528	1	1	0	0	0	0	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	c0007	528	1	0	0	0	0	1	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2L10_chr15_52104263_52117775	1/1	c0001	615	229	10	44	133	11	29	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	c0002	615	226	78	42	85	4	17	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	c0003	615	1	1	0	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	c0004	615	1	1	0	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	c0005	615	1	0	0	0	1	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L11_chr2_111115914_111173444	0/0	c0001	597	305	68	35	171	12	19	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	1/1	c0002	597	93	18	29	27	4	13	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L12_chr19_49660933_49678916	1/1	c0001	753	373	84	75	154	12	46	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L12_chr19_49660933_49678916	0/0	c0002	753	4	3	1	0	0	0	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L12_chr19_49660933_49678916	0/0	c0003	753	1	1	0	0	0	0	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L12_chr19_49660933_49678916	0/0	c0004	753	1	0	0	1	0	0	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L12_chr19_49660933_49678916	0/0	c0005	753	1	0	0	1	0	0	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L13_chr22_17633757_17735855	0/1	c0001	1458	200	60	34	79	7	19	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	1/0	c0002	1458	57	17	7	12	6	14	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0003	1458	19	4	11	0	3	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0004	1458	8	2	5	0	0	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0005	1458	5	0	3	1	0	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0006	1458	4	4	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0007	1458	3	3	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0008	1458	3	3	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0009	1458	2	0	2	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0010	1458	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0011	1458	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0012	1458	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855