JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM44_chr3_194582678_194638419	0/0	c0022	1287	1	0	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0023	1287	1	0	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0024	1287	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0025	1287	1	0	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0026	1287	1	0	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	c0027	1287	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM45A_chr3_100487619_100582444	1/1	c0001	828	168	22	45	64	5	30	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	c0002	828	125	33	18	68	2	4	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	c0003	828	24	23	1	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	c0004	828	4	4	0	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	c0005	828	1	0	0	0	1	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45B_chr11_129810848_129865003	1/1	c0001	828	283	35	56	154	13	23	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0002	828	82	41	13	23	0	5	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0003	828	14	0	1	4	1	8	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0004	828	12	10	2	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0005	828	3	3	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0006	828	2	2	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0007	828	2	0	0	2	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0008	828	2	2	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0009	828	1	1	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0010	828	1	0	0	1	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0011	828	1	1	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	c0012	828	1	1	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM47_chrX_34622075_34662285	0/1	c0001	546	144	30	23	76	2	12	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	1/0	c0002	546	139	40	28	49	5	16	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	c0003	546	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	c0004	546	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM50A_chr1_25333334_25367361	1/1	c0001	474	369	92	68	146	17	44	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	c0002	474	10	0	0	10	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	c0003	474	1	0	0	0	1	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50B_chr21_33444141_33484974	0/1	c0001	477	377	91	74	151	18	42	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	c0002	477	1	1	0	0	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	c0003	477	1	0	0	1	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM51_chr1_15148747_15225478	1/1	c0001	762	179	71	30	46	10	20	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0002	762	53	6	15	12	7	13	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0003	762	52	3	12	33	1	3	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0004	762	3	3	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0005	762	2	0	2	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0006	762	2	0	0	2	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0007	762	2	2	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0008	762	1	0	0	1	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0009	762	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0010	762	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0011	762	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	c0012	762	1	0	1	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM52B_chr12_10174032_10196804	1/1	c0001	552	413	87	75	183	18	48	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	c0002	552	5	0	0	5	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	c0003	552	3	2	1	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	c0004	552	2	0	0	2	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	c0005	552	2	0	0	1	0	1	copy fasta	TMEM52B	chr12	10174032	10196804