JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM52B_chr12_10174032_10196804	0/0	c0006	552	2	0	0	2	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	c0007	552	1	0	0	0	0	1	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	c0008	552	1	0	0	1	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	c0009	552	1	1	0	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52_chr1_1912591_1924279	1/0	c0001	630	173	41	32	71	7	21	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/1	c0002	621	103	3	26	55	7	11	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	c0003	630	66	35	7	14	0	10	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	c0004	630	10	3	1	6	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	c0005	621	5	1	0	4	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	c0006	621	2	0	0	2	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	c0007	648	1	0	0	1	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	c0008	648	1	0	0	1	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	c0009	630	1	1	0	0	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	c0010	612	1	0	0	1	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	c0011	630	1	0	0	1	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM53_chr1_44648247_44679481	1/1	c0001	834	327	84	72	109	18	42	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	c0002	834	4	3	1	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	c0003	834	1	0	0	1	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	c0004	834	1	0	1	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	c0005	834	1	1	0	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	c0006	834	1	0	1	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	c0007	834	1	0	1	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM54_chr1_32889595_32906389	1/1	c0001	669	334	94	60	135	10	33	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0002	669	15	0	0	15	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0003	669	2	0	0	2	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0004	669	2	0	0	2	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0005	669	2	0	0	0	0	2	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0006	669	1	0	0	0	0	1	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0007	669	1	0	1	0	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0008	669	1	0	0	1	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0009	669	1	0	1	0	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0010	669	1	1	0	0	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0011	669	1	1	0	0	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	c0012	669	1	0	0	1	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM59L_chr19_18607870_18626039	0/1	c0001	1029	209	47	29	110	5	17	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	1/0	c0002	1029	185	38	40	72	7	27	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	c0003	1029	4	4	0	0	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	c0004	1029	3	3	0	0	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	c0005	1029	2	0	0	2	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	c0006	1029	2	0	0	2	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	c0007	1029	1	0	1	0	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	c0008	1029	1	0	0	1	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	c0009	983	1	0	0	1	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59_chr1_54021681_54058204	1/1	c0001	972	354	91	52	165	6	38	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	c0002	972	3	3	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	c0003	972	1	0	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	c0004	972	1	0	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	c0005	972	1	0	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	c0006	972	1	0	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	c0007	972	1	0	0	1	0	0	copy fasta	TMEM59	chr1	54021681	54058204