JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM60_chr7_77788728_77803434	0/1	c0001	402	228	90	38	64	10	25	copy fasta	TMEM60	chr7	77788728	77803434
TMEM60_chr7_77788728_77803434	1/0	c0002	402	167	8	40	87	6	25	copy fasta	TMEM60	chr7	77788728	77803434
TMEM60_chr7_77788728_77803434	0/0	c0003	402	5	0	0	5	0	0	copy fasta	TMEM60	chr7	77788728	77803434
TMEM61_chr1_54975628_54997288	0/1	c0001	633	312	65	54	145	13	34	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	1/0	c0002	633	83	14	6	53	3	6	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0003	633	15	0	6	7	0	2	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0004	633	12	9	3	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0005	633	5	0	0	0	0	5	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0006	633	2	2	0	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0007	633	2	2	0	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0008	633	1	0	1	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0009	633	1	0	0	1	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0010	633	1	1	0	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0011	633	1	1	0	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	c0012	633	1	0	0	0	0	1	copy fasta	TMEM61	chr1	54975628	54997288
TMEM62_chr15_43128586_43190144	1/1	c0001	1932	337	74	56	165	12	28	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	c0002	1932	1	0	0	1	0	0	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	c0003	1932	1	0	0	0	0	1	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	c0004	1932	1	1	0	0	0	0	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	c0005	1932	1	1	0	0	0	0	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	c0006	1932	1	0	0	0	0	1	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	c0007	1932	1	0	1	0	0	0	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	c0008	1932	1	0	1	0	0	0	copy fasta	TMEM62	chr15	43128586	43190144
TMEM63A_chr1_225840536_225887380	1/1	c0001	2424	141	35	30	46	12	16	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0002	2424	82	35	4	32	0	11	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0003	2424	65	0	16	37	2	10	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0004	2424	40	0	5	32	0	3	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0005	2424	37	2	13	19	1	2	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0006	2424	16	0	0	15	0	1	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0007	2424	12	9	3	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0008	2424	10	0	0	10	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0009	2424	5	5	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0010	2424	2	2	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0011	2424	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0012	2424	1	0	0	0	0	1	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0013	2424	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0014	2424	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0015	2424	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0016	2424	1	0	1	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0017	2424	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0018	2424	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0019	2424	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0020	2424	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0021	2424	1	0	0	0	1	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0022	2424	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0023	2424	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0024	2424	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0025	2424	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	c0026	2424	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63B_chr6_44122554_44160519	1/1	c0001	2499	328	89	63	124	14	36	copy fasta	TMEM63B	chr6	44122554	44160519