JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM63B_chr6_44122554_44160519	0/0	c0002	2499	58	1	9	39	1	8	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0003	2499	3	0	0	0	0	3	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0004	2499	2	0	0	2	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0005	2499	2	0	0	2	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0006	2499	1	0	0	0	1	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0007	2499	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0008	2499	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0009	2499	1	0	1	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0010	2499	1	0	1	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0011	2486	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0012	2499	1	0	0	0	0	1	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0013	2499	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	c0014	2499	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63C_chr14_77176798_77264495	0/1	c0001	2421	226	60	43	88	8	26	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0002	2421	35	0	13	9	3	10	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	1/0	c0003	2421	19	6	10	0	0	2	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0004	2421	8	8	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0005	2421	7	7	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0006	2421	4	1	2	0	1	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0007	2421	3	0	0	3	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0008	2421	2	2	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0009	2421	2	0	2	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0010	2421	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0011	2421	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0012	2421	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0013	2421	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0014	2421	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0015	2421	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0016	2421	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0017	2421	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0018	2421	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0019	2421	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0020	2421	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0021	2421	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0022	2421	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0023	2421	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0024	2421	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	c0025	2421	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM64_chr8_90617000_90651083	1/1	c0001	1143	295	47	60	150	12	24	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0002	1143	26	23	3	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0003	1143	8	7	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0004	1146	7	7	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0005	1143	6	6	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0006	1143	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0007	1143	1	0	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0008	1143	1	0	0	0	0	1	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0009	1143	1	0	0	0	0	1	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0010	1143	1	0	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	c0011	1146	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM65_chr8_124301189_124377701	1/1	c0001	723	347	82	56	163	10	34	copy fasta	TMEM65	chr8	124301189	124377701