JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM65_chr8_124301189_124377701	0/0	c0002	723	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM67_chr8_93749894_93823121	0/1	c0001	2988	176	67	35	51	4	18	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	1/0	c0002	2988	108	20	23	44	8	12	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0003	2988	22	0	4	15	0	3	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0004	2988	4	3	1	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0005	2988	1	1	0	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0006	2988	1	0	1	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0007	2988	1	0	0	1	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0008	2988	1	0	0	0	0	1	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0009	2988	1	0	0	1	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0010	2988	1	1	0	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0011	2988	1	0	0	1	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	c0012	2988	1	0	0	1	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM68_chr8_55733758_55778378	1/1	c0001	975	361	90	59	158	10	42	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	c0002	975	7	0	3	4	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	c0003	975	1	0	0	1	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	c0004	975	1	1	0	0	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	c0005	975	1	0	0	1	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	c0006	975	1	1	0	0	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM69_chr1_45683181_45699436	1/1	c0001	744	321	88	66	124	12	29	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	c0002	744	15	0	0	15	0	0	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	c0003	744	13	0	0	13	0	0	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	c0004	744	2	0	0	0	0	2	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	c0005	744	1	0	0	0	0	1	copy fasta	TMEM69	chr1	45683181	45699436
TMEM70_chr8_73971195_73987783	1/1	c0001	783	297	62	44	138	14	37	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	c0002	783	64	13	14	27	1	9	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	c0003	783	13	0	11	1	0	1	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	c0004	783	11	10	1	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	c0005	783	8	1	1	5	0	1	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	c0006	783	3	3	0	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	c0007	783	2	0	2	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	c0008	783	2	1	1	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	c0009	783	1	0	0	0	1	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	c0010	783	1	0	0	1	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM71_chr8_132704941_132765582	1/1	c0001	888	354	71	62	174	10	35	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	c0002	888	11	0	8	0	0	3	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	c0003	888	4	0	0	4	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	c0004	888	2	2	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	c0005	888	2	2	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	c0006	888	2	0	2	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	c0007	888	1	1	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	c0008	888	1	1	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	c0009	888	1	1	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM72_chr10_44906337_44942010	1/1	c0001	828	244	43	41	112	13	33	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	c0002	828	141	32	23	70	5	11	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	c0003	828	11	9	2	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	c0004	828	3	1	2	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	c0005	828	2	2	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	c0006	828	1	1	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	c0007	828	1	0	0	1	0	0	copy fasta	TMEM72	chr10	44906337	44942010