JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM72_chr10_44906337_44942010	0/0	c0008	828	1	0	0	1	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	c0009	828	1	1	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	c0010	828	1	1	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM74B_chr20_1175570_1189981	1/1	c0001	771	439	94	84	195	16	48	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	c0002	771	2	0	0	2	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	c0003	771	1	0	0	1	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	c0004	771	1	0	0	1	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	c0005	771	1	0	0	1	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74_chr8_108773974_108792594	1/1	c0001	918	399	84	73	189	10	41	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	c0002	918	5	4	1	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	c0003	918	4	4	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	c0004	918	1	0	0	0	0	1	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	c0005	918	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM79_chr1_156279325_156297443	1/1	c0001	1185	272	66	45	123	10	26	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0002	1185	86	6	22	37	6	15	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0003	1185	7	6	1	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0004	1185	4	0	0	4	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0005	1185	2	2	0	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0006	1185	2	0	0	2	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0007	1185	1	1	0	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0008	1185	1	0	0	1	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0009	1185	1	0	0	1	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0010	1185	1	0	0	0	0	1	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	c0011	1185	1	1	0	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM80_chr11_690816_709129	1/1	c0001	432	309	62	63	132	16	34	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	c0002	432	90	31	12	37	2	8	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	c0003	432	1	1	0	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	c0004	432	1	0	1	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	c0005	432	1	0	1	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	c0006	432	1	0	1	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	c0007	432	1	0	0	1	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM81_chr1_205078129_205089460	0/1	c0001	768	281	14	59	165	13	29	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	1/0	c0002	768	68	46	6	8	1	6	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	c0003	768	43	27	2	3	4	7	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	c0004	768	4	0	0	4	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	c0005	768	4	3	1	0	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	c0006	768	3	3	0	0	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	c0007	768	2	2	0	0	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	c0008	768	1	1	0	0	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM82_chr1_15737499_15752982	1/0	c0001	1032	262	44	61	114	7	35	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0002	1032	42	12	8	6	5	11	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0003	1032	25	0	0	24	1	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0004	1032	14	9	2	0	2	1	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0005	1032	6	3	3	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0006	1032	5	3	2	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/1	c0007	1035	3	0	1	0	1	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0008	1032	3	3	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0009	1032	2	1	1	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0010	1032	2	2	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0011	1032	2	2	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982