JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM82_chr1_15737499_15752982	0/0	c0012	1032	2	1	1	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0013	1032	2	0	0	0	1	1	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0014	1032	2	0	0	2	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0015	1032	1	0	0	1	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0016	1032	1	0	1	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0017	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0018	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0019	1032	1	0	0	1	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0020	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0021	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0022	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0023	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0024	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0025	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0026	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0027	1032	1	0	0	0	1	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0028	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0029	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	c0030	1032	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM86A_chr11_18693779_18709785	1/1	c0001	723	449	84	78	222	18	45	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	c0002	723	15	14	1	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	c0003	723	3	0	1	0	0	2	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	c0004	723	1	0	0	0	0	1	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86B_chr19_55221638_55233763	0/0	c0001	681	198	33	38	96	10	21	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/1	c0002	681	117	44	21	41	1	9	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0003	681	62	19	15	21	1	6	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	1/0	c0004	681	38	0	4	21	2	10	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0005	681	2	0	0	0	0	2	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0006	681	2	0	1	0	1	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0007	681	2	0	0	2	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0008	668	1	1	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0009	681	1	0	0	0	0	1	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0010	681	1	0	1	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0011	681	1	0	0	1	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0012	681	1	0	0	1	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0013	681	1	0	0	0	1	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0014	681	1	0	0	1	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0015	681	1	1	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	c0016	681	1	0	0	0	0	1	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM87A_chr15_42205447_42278433	1/1	c0001	1668	245	85	43	76	12	27	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	c0002	1668	61	2	11	39	0	9	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	c0003	1668	17	0	0	17	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	c0004	1668	3	3	0	0	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	c0005	1668	2	2	0	0	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	c0006	1668	1	0	0	1	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	c0007	1668	1	0	0	1	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87B_chr2_112050269_112124314	1/1	c0001	1668	228	55	50	86	7	28	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	c0002	1665	77	23	17	22	7	8	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	c0003	1668	6	0	2	0	2	2	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	c0004	1668	4	4	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314