JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM87B_chr2_112050269_112124314	0/0	c0005	1668	1	0	1	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM88B_chr1_1420871_1435255	1/1	c0001	492	2	0	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88B_chr1_1420871_1435255	0/0	c0002	492	1	1	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88B_chr1_1420871_1435255	0/0	c0003	492	1	1	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88_chr17_7850066_7861099	1/1	c0001	480	380	85	76	154	16	47	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0002	480	37	0	1	35	0	1	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0003	480	4	4	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0004	480	3	3	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0005	480	2	0	0	2	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0006	480	1	1	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0007	480	1	0	0	1	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0008	480	1	1	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0009	480	1	0	1	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0010	480	1	1	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	c0011	480	1	1	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM89_chr3_48615759_48626769	1/1	c0001	480	253	61	35	101	15	39	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	c0002	480	36	20	8	7	1	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	c0003	480	8	0	0	8	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	c0004	480	5	5	0	0	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	c0005	480	4	4	0	0	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	c0006	480	2	0	0	2	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	c0007	480	1	0	0	1	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	c0008	480	1	0	0	1	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	c0009	480	1	0	1	0	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	c0010	480	1	0	0	0	0	1	copy fasta	TMEM89	chr3	48615759	48626769
TMEM8B_chr9_35824228_35870515	1/0	c0001	2775	264	65	44	124	6	24	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/1	c0002	2775	118	13	22	62	6	14	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0003	2775	5	0	0	5	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0004	2775	5	5	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0005	2775	4	4	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0006	2775	2	2	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0007	2775	2	0	2	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0008	2775	2	0	0	0	0	2	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0009	2775	2	0	2	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0010	2775	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0011	2775	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0012	2775	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0013	2775	1	0	0	0	1	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0014	2775	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0015	2775	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0016	2775	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0017	2775	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0018	2775	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0019	2775	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0020	2775	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	c0021	2775	1	0	0	0	1	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM91_chr19_41371533_41389083	0/1	c0001	519	220	62	37	79	11	30	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	1/0	c0002	519	157	22	33	81	3	17	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	c0003	519	8	8	0	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	c0004	519	2	0	2	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083