JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM91_chr19_41371533_41389083	0/0	c0005	519	1	0	0	1	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	c0006	519	1	0	0	1	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	c0007	519	1	0	0	1	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	c0008	490	1	0	0	0	0	1	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	c0009	519	1	0	0	1	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	c0010	519	1	1	0	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	c0011	519	1	1	0	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM92_chr17_50269466_50286485	0/0	c0001	480	275	40	46	155	5	29	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	1/0	c0002	480	123	21	36	43	10	12	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	c0003	480	58	15	1	34	1	7	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	c0004	480	20	19	1	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/1	c0005	480	5	2	2	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	c0006	480	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM94_chr17_75451635_75505452	0/0	c0001	4071	188	41	32	81	11	23	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	1/0	c0002	4071	130	32	17	73	1	6	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/1	c0003	4071	13	2	6	0	1	3	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0004	4071	7	3	1	0	1	2	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0005	4071	5	3	2	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0006	4071	3	3	0	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0007	4071	1	0	0	0	0	1	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0008	4071	1	1	0	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0009	4071	1	1	0	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0010	4071	1	0	1	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0011	4071	1	0	0	0	0	1	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0012	4071	1	1	0	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0013	4071	1	0	1	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	c0014	4071	1	1	0	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM95_chr17_7350156_7362219	1/1	c0001	531	420	100	85	169	18	46	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	c0002	531	8	0	0	8	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	c0003	531	2	0	0	2	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	c0004	531	1	0	1	0	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	c0005	531	1	0	0	1	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM97_chr17_28314200_28333685	1/1	c0001	531	371	88	72	155	10	44	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	c0002	531	2	0	0	2	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	c0003	541	1	0	0	1	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM98_chr17_32923153_32949315	1/1	c0001	681	372	82	66	168	15	39	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	c0002	681	20	9	10	0	0	1	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	c0003	681	4	0	2	0	2	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	c0004	681	3	1	2	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	c0005	681	1	0	0	0	1	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	c0006	681	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	c0007	681	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM9B_chr11_8942202_8969442	1/1	c0001	597	252	53	56	99	13	29	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	c0002	597	188	43	12	113	3	17	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	c0003	597	2	2	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9_chr1_201129772_201159474	0/1	c0001	552	281	62	54	117	12	35	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	1/0	c0002	552	136	30	22	72	4	7	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	c0003	552	9	0	0	5	0	4	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	c0004	552	4	0	4	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMF1_chr3_69014827_69057333	0/1	c0001	3282	254	46	55	109	13	30	copy fasta	TMF1	chr3	69014827	69057333