JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMF1_chr3_69014827_69057333	1/0	c0002	3282	101	18	4	70	2	6	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0003	3282	9	8	1	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0004	3282	8	0	6	0	1	1	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0005	3282	4	4	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0006	3282	3	0	0	3	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0007	3282	3	3	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0008	3282	3	3	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0009	3282	2	0	0	2	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0010	3282	2	2	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0011	3282	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0012	3282	1	0	0	0	0	1	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0013	3282	1	0	0	0	1	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0014	3282	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0015	3282	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0016	3282	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0017	3282	1	0	0	0	1	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0018	3282	1	0	1	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0019	3282	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0020	3282	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0021	3282	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0022	3282	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	c0023	3282	1	0	1	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMIE_chr3_46696392_46715886	0/1	c0001	468	295	82	54	118	10	30	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	1/0	c0002	471	132	10	25	76	8	12	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	c0003	474	4	3	1	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	c0004	468	1	1	0	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIGD1_chr17_30311333_30339057	1/1	c0001	789	332	88	74	117	12	39	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	c0002	789	5	5	0	0	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	c0003	789	3	3	0	0	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	c0004	789	2	0	0	2	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	c0005	789	2	2	0	0	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	c0006	789	1	0	0	0	0	1	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	c0007	789	1	0	1	0	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	c0008	789	1	0	0	1	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	c0009	789	1	0	1	0	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD2_chr19_4287227_4307389	1/1	c0001	837	143	17	34	68	5	17	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0002	837	132	42	10	71	2	7	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0003	837	62	4	17	31	3	7	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0004	837	41	1	11	17	2	10	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0005	837	12	9	2	1	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0006	837	7	7	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0007	837	7	7	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0008	837	7	0	0	2	2	3	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0009	837	5	0	1	0	0	4	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0010	837	4	4	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0011	837	3	0	2	0	0	1	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0012	837	2	1	0	0	0	1	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0013	837	1	0	1	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0014	837	1	0	0	1	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0015	837	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389