JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCL2L13_chr22_17633757_17735855	0/0	c0013	1458	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	c0014	1458	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L14_chr12_12065939_12104695	1/0	c0001	984	189	28	28	101	4	27	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/1	c0002	984	164	22	28	93	5	15	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0003	984	43	9	15	5	8	6	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0004	984	15	2	5	8	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0005	984	6	6	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0006	984	4	4	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0007	984	3	3	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0008	984	3	3	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0009	984	3	0	2	0	1	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0010	984	3	1	2	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0011	984	3	3	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0012	984	2	2	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0013	984	2	2	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0014	984	2	0	0	2	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0015	984	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0016	984	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0017	984	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0018	984	1	0	1	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0019	984	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0020	984	1	0	0	1	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0021	984	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0022	984	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0023	984	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0024	984	1	0	1	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0025	984	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	c0026	984	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L15_chr1_113871816_113892581	0/1	c0001	492	450	86	83	221	16	43	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	c0002	492	4	4	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	c0003	492	1	0	0	0	0	1	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	1/0	c0004	492	1	0	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	c0005	492	1	0	0	1	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	c0006	492	1	0	1	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L1_chr20_31659458_31727868	1/1	c0001	702	186	82	54	12	16	20	copy fasta	BCL2L1	chr20	31659458	31727868
BCL2L2_chr14_23301833_23316751	0/1	c0001	582	259	72	59	90	9	28	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	c0002	582	139	7	20	92	7	13	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	c0003	582	34	19	1	12	1	1	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	1/0	c0004	582	2	0	0	0	1	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2_chr18_63118346_63324769	1/0	c0001	720	193	71	39	67	4	11	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/1	c0002	720	52	3	20	12	4	12	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	c0003	720	9	0	0	8	0	1	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	c0004	720	9	4	1	4	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	c0005	720	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL3_chr19_44743708_44765044	1/1	c0001	1365	332	89	74	113	15	39	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	c0002	1365	3	2	0	1	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	c0003	1365	2	2	0	0	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	c0004	1365	2	0	0	0	1	1	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	c0005	1365	2	0	2	0	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	c0006	1376	1	0	0	1	0	0	copy fasta	BCL3	chr19	44743708	44765044